Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND efflux membrane fusion protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 44/175 (25%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 244 LEQEKELLEAQRQVAQQR---AELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQL 300
           L  E+  ++A+    QQ    A ++V +S+ + L E L G +  +  +   K  +A  +L
Sbjct: 107 LASERAQVQAEIAAIQQSRAVAGIDVERSR-QLLAEGLAGRRDYELTQI--KVAEADAKL 163

Query: 301 ASLNQELSKVR---EREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQA 357
           A    +L+++     R+  +++R+P DG VQQL+  +  A++ P   L +I PE   +  
Sbjct: 164 AESRAKLTRIDIQLNRQSAQLVRAPRDGRVQQLNAASGSAMVSPGTVLAVIAPERVERAV 223

Query: 358 EVQILNKDVGFVYPGQSVTVKVDAFPYTRY--------GTIDAELLSISRDSTTD 404
           E+ I  +DV  + PG+ V ++ + +P  ++        G  D  + +I  ++  D
Sbjct: 224 ELYIDGRDVPLIRPGRPVRLEFEGWPAIQFSGWPSVAHGMFDGRVRAIDPNAAPD 278