Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Type I secretion membrane fusion protein, HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  108 bits (271), Expect = 3e-28
 Identities = 102/428 (23%), Positives = 179/428 (41%), Gaps = 18/428 (4%)

Query: 53  FARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDG 112
           F R   + +  G  +  LWA    LD      G +VVSG+ + +QS +   +  I V +G
Sbjct: 21  FVRAGWILMLAGAGSFFLWASLAPLDQGIAVQGTVVVSGKRKAVQSLDGGVVSKILVSEG 80

Query: 113 QRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRT--------------LLNDQL 158
           Q V++G PL  LD   V  D+  L +Q       L R+++              +   Q 
Sbjct: 81  QLVKEGEPLFRLDQTQVEADVQSLRAQYRMAWASLARWQSERDNLDEVRFPAELIAAGQG 140

Query: 159 LTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQL 218
              DP    +   Q+ L      +   E     ASI          + AR      LL  
Sbjct: 141 QDPDPRLALVLEGQRQLFSSRRQALAREQSGLQASIEGAGLQLAGMRRARSD----LLAQ 196

Query: 219 TENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERL 278
            +++ ++L+  + L Q   I     LE +++L + Q+ +AQ   E   ++        RL
Sbjct: 197 ADSLRKQLSNLEPLAQNGFIPGNRLLEFQRQLSQVQQSLAQNAGETGRIEQGIVESRLRL 256

Query: 279 TGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAV 338
              + + Q+E   +   A+++  +L Q+L+      Q   I +P DG    L V+T GAV
Sbjct: 257 QQQREEYQKEVRSQWADAQVKALTLEQQLASAGFSLQHSAILAPADGIAVNLGVHTEGAV 316

Query: 339 LQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSIS 398
           ++  + L+ IVP+    + E ++  + +  V     V +   AF  +R   +  E+  IS
Sbjct: 317 VRAGETLLEIVPQGTRLEVEGRLPVQLIDKVASHLPVDILFTAFNQSRTPRVSGEVSLIS 376

Query: 399 RDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQE 458
            D   DE+ G  +        +  +     + + PGM     ++T +R +++YL  P+ +
Sbjct: 377 ADQMQDEKTGQPYYVLRTSVGDAALEKLNGLVIKPGMPAEMFVRTGERSLLNYLFKPLLD 436

Query: 459 YQAEALRE 466
               AL E
Sbjct: 437 RAGSALTE 444