Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Type I secretion membrane fusion protein, HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  295 bits (754), Expect = 3e-84
 Identities = 174/446 (39%), Positives = 273/446 (61%), Gaps = 19/446 (4%)

Query: 34  HHYEFLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRS 93
           H  +FLPA L L  +P  P  RV    +      ALLWA  GK+DV ATA+G+++ SG++
Sbjct: 35  HEVQFLPAALELQDKPSHPAPRVFMWAIMFFAALALLWACLGKIDVVATASGKIIPSGKT 94

Query: 94  QVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQ---AEFQTNELIRY 150
           + IQS E + + +IHVRDGQ V+ G  LL LD+   + D+ R+ S    A   +      
Sbjct: 95  KTIQSSETAVVKAIHVRDGQSVKAGQLLLELDSTSADADVGRVRSDLLAARIDSARAAAM 154

Query: 151 RTLLNDQLLTHDPMFTALPAE-QQALIHENYLS-EKNEFDSTLASITAEMKVNRTSQAAR 208
              +N +    D   T L A+    L  E +L  +  E+ S+L  + AE++        R
Sbjct: 155 LDAINQRKPPRDLTGTILDADPMHVLAAERWLQGQYQEYRSSLDLVDAEIQ-------QR 207

Query: 209 QSDIHAL------LQLTENISQRLAAR-KKLNQVKVIGHVEYLEQEKELLEAQRQVAQQR 261
           Q+DI A       LQ T  I+ +LA+  + L + + I    YLE+E+  L+ +RQ++ Q+
Sbjct: 208 QADIQAARIQVMSLQKTLPIATKLASDYENLLKKQYIARHAYLEKEQARLDLERQLSVQQ 267

Query: 262 AELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRS 321
           A +    +  +  E R  G  AQ +R  L+  +QA  ++AS NQ+L+K R +E L  + +
Sbjct: 268 ASVLQSTAARQEAERRREGVVAQTRRAMLDLLQQADQKIASFNQDLTKARYQEDLTTLEA 327

Query: 322 PVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDA 381
           PVDGTVQQL+V+T+G V+ PAQ LM++VP+ +  + E  + NKDVGFV  GQ+VTVKV+ 
Sbjct: 328 PVDGTVQQLAVHTVGGVVTPAQPLMVLVPDGQPVEVEAMLENKDVGFVRAGQAVTVKVET 387

Query: 382 FPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEI 441
           F +T+YGTI+ E++S+S D+  DE+ GL++ ++I+L ++ + ++G  ++L+PGM+V AE+
Sbjct: 388 FTFTKYGTIEGEVISVSNDAIEDEKRGLIYSSKIRLNSDTLNVNGVDIKLSPGMAVTAEV 447

Query: 442 KTDKRRVIDYLLSPIQEYQAEALRER 467
            T+KRRVI+Y LSP+Q++ +E+ RER
Sbjct: 448 TTNKRRVIEYFLSPLQQHASESFRER 473