Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., Type I secretion membrane fusion protein, HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  100 bits (248), Expect = 1e-25
 Identities = 95/413 (23%), Positives = 168/413 (40%), Gaps = 25/413 (6%)

Query: 56  VTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRV 115
           VT + ++ G+     WA    LD     +G ++V    + +Q  E   +  + VRDG  V
Sbjct: 28  VTIVLVTFGLFGT--WAALAPLDNAVYGSGLVMVQSYRKTVQHLEGGIVKELLVRDGDTV 85

Query: 116 EKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRT------LLNDQLLTHDPMFTALP 169
            KG PL+ LD        ++L SQ E   N+LI  +          D+L +  P+   + 
Sbjct: 86  HKGDPLIVLDD-------SQLRSQYESTRNQLISTQAREARLRAERDELPSIPPL--TIT 136

Query: 170 AEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHAL-------LQLTENI 222
                   E    E+  F +   S   E+ V R      +  I  L       + L ++ 
Sbjct: 137 GTDSVRAKEAIAGEQQVFSTRKNSRLTEISVQRERIGQLKQQISGLRDMIRTKVSLEKSY 196

Query: 223 SQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFK 282
           S  +   K L     +     LEQE++L   + +VA   + +   + Q    E ++    
Sbjct: 197 SSEITELKDLLSQGFVDKQRLLEQERKLDMLKSEVADHESTITKTQLQISETELQIIQLN 256

Query: 283 AQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPA 342
                +  ++    + ++  L +  + +++R    +IR+P DG V  + V+T+G V+   
Sbjct: 257 KNFSSDVAKELSDVQAKVFDLQETANALQDRLSRVVIRAPEDGMVLDMKVHTVGGVVSAG 316

Query: 343 QNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDST 402
             L+ IVPE+     E  +   D+  +  G+   V   AF       I+ E+  IS D  
Sbjct: 317 TPLLDIVPESSELVVEAHVAITDIDRISIGKLTDVHFSAFNSATTPVIEGEVTRISADRL 376

Query: 403 TDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSP 455
            D+     +  +++L    +   G   +L PGM     I   +R ++ YLL P
Sbjct: 377 KDDAGEPYYLVRVKLTEKGMKRLGDR-KLQPGMPAEVLINAGERTMLQYLLKP 428