Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., HlyD family efflux transporter periplasmic adaptor subunit from Synechocystis sp000284455 PCC 6803

 Score = 95.5 bits (236), Expect = 4e-24
 Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 24/257 (9%)

Query: 230 KKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREW 289
           ++L + KV   VE   Q++++   Q ++ +   E   L+S     + RL    A   ++ 
Sbjct: 325 QQLIEQKVNTVVEVDRQKQQIESRQAEIQRLETEQSRLQSLISQAQARLANTSAVTDKDI 384

Query: 290 LEKRRQARLQLASLNQELSKVR--------------EREQLEI----IRSPVDGTVQQLS 331
            ++      +LA ++ +++K+               ER ++ +    I SPVDG V  L 
Sbjct: 385 YDRLADNNKRLAEIDSQITKIIVDNDKRLTELNGQIERAKVNLGYQEITSPVDGVVFDLK 444

Query: 332 VYTLGAVLQPAQN--LMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGT 389
             T G V  P Q   L+ I+P + +  AEV + NKD+GFV  G  V V++D+FPY+ +G 
Sbjct: 445 A-TPGYVTPPNQTEPLLKIIPADSLV-AEVDVTNKDIGFVRTGMPVDVRIDSFPYSEFGG 502

Query: 390 IDAELLSISRDSTTDEQLGLV--FPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRR 447
           +D E+  +  D+   +Q      FP +I+L +  ++  G+ + L  GMSV A I+  ++R
Sbjct: 503 VDGEVEYVGSDALPPDQTYQFYRFPVRIKLDSQELVSHGREIPLQSGMSVTANIRVREKR 562

Query: 448 VIDYLLSPIQEYQAEAL 464
            +  + + +   + E+L
Sbjct: 563 TVMSIFTELFTKKIESL 579



 Score = 51.6 bits (122), Expect = 7e-11
 Identities = 86/412 (20%), Positives = 159/412 (38%), Gaps = 37/412 (8%)

Query: 44  ALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSR 103
           A+  R    +AR  A+ +    + A+ WA    ++    ATG+L      + I +     
Sbjct: 53  AIVMRQSPMWARGIAIAIMGVTVVAVTWASIATIEQVVPATGQLKPLDTVKDINAPLNGV 112

Query: 104 LLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDP 163
           +  + V + ++V+KG  L+ +D+     ++T   +       E   YRTLL + L     
Sbjct: 113 VKEVLVENNRKVKKGEVLVIMDSSSTRAELTAAQNIRSKVLQENAFYRTLLQNGL----- 167

Query: 164 MFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENIS 223
                   Q+A+   N   E     +  A +  E K+ R     R +     L   E +S
Sbjct: 168 ---EGSTLQRAISQLNLPWEVVALANNRAELINENKLYRQQLGLRNASGEGQLS-AEQLS 223

Query: 224 QRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKA 283
           +   AR +L        +E  + EK+L +A  Q+   RAE    +SQ +  ++ L G   
Sbjct: 224 RLEMARFELGSRVTAAELEIRQIEKQLQQASLQL---RAE----RSQLQEDQKILAGLLG 276

Query: 284 QKQREWLEKRRQARLQLASLNQELSKVRE----REQLEIIRSPVDGTVQQLSVYTLGAVL 339
           + +   +E  +   ++   +N     + E    R Q+E  +  ++   QQL    +  V+
Sbjct: 277 RNEAALVEAEKSLAIEAGIVNSMTPLLEEGALARLQVEKQQQSLNDRTQQLIEQKVNTVV 336

Query: 340 ------QPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFP-----YTRYG 388
                 Q  ++    +     +Q+ +Q L           S     D +        R  
Sbjct: 337 EVDRQKQQIESRQAEIQRLETEQSRLQSLISQAQARLANTSAVTDKDIYDRLADNNKRLA 396

Query: 389 TIDAEL--LSISRDSTTDEQLGLVFPAQIQLKTNHIM--IDGQTVEL--TPG 434
            ID+++  + +  D    E  G +  A++ L    I   +DG   +L  TPG
Sbjct: 397 EIDSQITKIIVDNDKRLTELNGQIERAKVNLGYQEITSPVDGVVFDLKATPG 448