Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., HlyD family protein secretion protein from Sinorhizobium meliloti 1021

 Score =  106 bits (265), Expect = 1e-27
 Identities = 104/448 (23%), Positives = 188/448 (41%), Gaps = 27/448 (6%)

Query: 40  PAHLALAQRPP--------SPFAR--VTALTLSLGVLAALL-WAYWGKLDVQATATGRLV 88
           PA L+ A   P        SP  R  +  LT  L        WA+  +L   +  +G +V
Sbjct: 31  PARLSAAMPEPDLSEDNTHSPIRRLVIAGLTTILVAFGGFFGWAFSTELSSASVTSGTIV 90

Query: 89  VSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELI 148
           V  + + +  +E   L  I V++G  V  G PL+ L+      D+  L S+      +L 
Sbjct: 91  VDSKRKTVSHFEGGVLGRILVQEGDHVAPGQPLMKLEDTRARSDLQALQSRRVGLIAKLA 150

Query: 149 RYRTLLNDQLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTS---Q 205
           R R    ++   H   F A    +     +   +EK  F+    +  + + + R +    
Sbjct: 151 RLRA---ERAGLHAVSFPADLVSEGEAAADAVTAEKAFFEKRSEAKESRLAIQRKTIEEY 207

Query: 206 AARQSDIHALLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQR---QVAQQRA 262
           + +   + A LQ T+   + +  ++      V    +   Q  +L+E      ++A  R 
Sbjct: 208 SEKAKSLTAQLQATDRQIELMNEQRTAIATLV---EKAFAQRSKLIEIDARLSELAATRG 264

Query: 263 ELEVLKSQYESL----EERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEI 318
           EL   K+Q E      E  L G ++  Q E   +   ARL+LA + Q ++   +  +   
Sbjct: 265 ELAGDKAQAEKAMAGAELALIGIESDFQSEIAGEITTARLELAEVEQRITAAEDVLRRLE 324

Query: 319 IRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVK 378
           IR+P  G V  + + T G+ + P Q L+ IVPE+     E+ +  +D+  +  G S  ++
Sbjct: 325 IRAPQAGIVANIQLRTPGSAVTPGQPLLDIVPEDEPLLVEMHVSTRDIDSITIGSSTQIR 384

Query: 379 VDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVV 438
           + A+    +  ++ ++  I+ D + DE+  + +       T   +     + L PGM   
Sbjct: 385 LTAYNQRSHLPLEGKVTYIAADQSVDEKSNVAYFVARAEVTPESLAANPDIRLYPGMPAE 444

Query: 439 AEIKTDKRRVIDYLLSPIQEYQAEALRE 466
             I    R  IDYL++P+ +    A RE
Sbjct: 445 VLIVHKSRSAIDYLVAPVSDSFNRAFRE 472