Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  160 bits (405), Expect = 8e-44
 Identities = 117/439 (26%), Positives = 203/439 (46%), Gaps = 33/439 (7%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+T   L+  + A L+WAY+ +LD     TG+++ S + QVIQS +   L  + VR+G  
Sbjct: 29  RLTIWALTSLIFAFLIWAYFAELDQVTVGTGKVIPSSQIQVIQSLDGGVLQELFVREGNI 88

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLND------------------ 156
           V KG PL  +D      D  +   +       +IR RT LN                   
Sbjct: 89  VAKGEPLARIDDTRFRSDFAQQEEEVFSLQANVIRMRTELNSITVSDMASDWREQVRIVK 148

Query: 157 QLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALL 216
           Q L      +A  AE  A     Y    +  ++ L  +  +++  +       + I  + 
Sbjct: 149 QELIFPDALSAQKAELVARQQAEYNGRLDNLENQLEILARQIQQRQQENEELTTKIATMT 208

Query: 217 QLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEE 276
              + IS+ L   + L Q  ++  VE       LL+ +R V + + EL+ ++     ++ 
Sbjct: 209 TSFQLISRELELTRPLAQKGIVPEVE-------LLKLERTVNELQGELKAMRQLRPKIKA 261

Query: 277 RLTGFKAQKQREWLEKRRQARLQLASLNQELSKVRERE-------QLEIIRSPVDGTVQQ 329
            L     +++          R QL  +   LS++ E +          +I SPV+GTV+ 
Sbjct: 262 TLDEAILKRREAVFVFAADTRAQLNDMQTRLSRMSEAQVGAQDKVSKAVITSPVNGTVKT 321

Query: 330 LSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGT 389
           + + TLG V+QP  ++M IVP       E +I  KD+ F++ G    VKV A+ +TRYG 
Sbjct: 322 VHINTLGGVVQPGVDIMEIVPSEDQLLIEAKITPKDIAFLHVGLPAVVKVTAYDFTRYGG 381

Query: 390 IDAELLSISRDSTTDEQLGLVFPAQIQ-LKTNHIMIDGQTVELTPGMSVVAEIKTDKRRV 448
           +   +  IS D+T DE+    +  +++  +++ +  DG  + + PGM    ++ T +R +
Sbjct: 382 LQGTVEHISADTTQDEEGNSFYLIRVRTAESSLVKDDGTEMPIIPGMLTSVDVITGQRSI 441

Query: 449 IDYLLSPIQEYQAEALRER 467
           ++Y+L+PI   +  ALRER
Sbjct: 442 LEYILNPILRAKDTALRER 460