Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 57/325 (17%)

Query: 136 LVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASIT 195
           LV Q+E Q N+ +   TLL       D  F A   + +A +            + LA++ 
Sbjct: 52  LVVQSEVQDNQYVTAGTLLAK---LDDSEFRARVLQSEARLAS--------VGAELATLE 100

Query: 196 AEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVKVIGH-------VEYLEQEK 248
           A++ +  +  A  ++ + A       + Q+L    +L +              E+   E 
Sbjct: 101 AKLLLQASLIAQAKAGVQATEADVRRVQQQLTRASELRRRDYSSQDDVDRLTAEFDGAEA 160

Query: 249 ELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELS 308
            L E++  +A +  EL VLK+Q E L      F A+ +         A L+LA L     
Sbjct: 161 RLAESRASLAAREQELGVLKAQREQL------FAARAEAN-------AGLELAQL----- 202

Query: 309 KVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGF 368
           ++++ E    IR+P +G V +   + +G  +QP Q L  +VP+  V           +  
Sbjct: 203 QLKDTE----IRAPFNGIVGKRGAF-VGQYVQPGQALFSLVPDGTVW-ITANFKETQIQA 256

Query: 369 VYPGQSVTVKVDAFP-YTRYGTID-------AELLSISRDSTTDEQLGLV--FPAQIQLK 418
           + PGQ V V +DAFP +  +G ID       A+   +  ++ T     +V   P +I+L+
Sbjct: 257 MVPGQPVAVSLDAFPDHDFHGVIDSLSPASGAKFSLLPAENATGNFTKIVQRIPVRIRLE 316

Query: 419 TNHIMIDGQTVELTPGMSVVAEIKT 443
                +     ++ PG+S V  + T
Sbjct: 317 -----LPPGEQKVVPGLSAVVSVDT 336