Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  111 bits (277), Expect = 6e-29
 Identities = 101/409 (24%), Positives = 185/409 (45%), Gaps = 33/409 (8%)

Query: 70  LWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGV 129
           LWA    L     A G +VV    + +Q  E   +  I V++G RV +G PL+ L+T   
Sbjct: 88  LWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLET--- 144

Query: 130 NQDITRLVSQAEFQTNELIRYRTLL--------NDQLLTHDPMFTALPAEQQALIHENYL 181
               T+ ++ A   +N+   Y+ L           + +T  P   A+ A+ +    E   
Sbjct: 145 ----TQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIAV-AKLKPETAEILQ 199

Query: 182 SEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVKVIGHV 241
           +++ +FD    SI  ++ + +   A  + +I  L    ++  ++L    ++ Q +++G  
Sbjct: 200 AQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQL----EIFQDEIVGLR 255

Query: 242 EYLEQ----EKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQAR 297
           E L +       +L  +R++ +   E+    S     E+ +   + Q  +   + R    
Sbjct: 256 ELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQFREDVV 315

Query: 298 LQLASLNQELSKVREREQLE-------IIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVP 350
            QL  +  +LS++RER  +        ++ +   G +Q L+V+TLG +++P + LM IVP
Sbjct: 316 GQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETLMEIVP 375

Query: 351 ENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQ-LGL 409
           E+     E QI  +D+  V PG    V+  AF       ID  L  +S D   +E+    
Sbjct: 376 EDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNERDSSS 435

Query: 410 VFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQE 458
            + A+I++    +   G  + L  GM V   IKT +R V+ Y L P+++
Sbjct: 436 YYKARIEVSDEELAKLG-GLALRAGMPVDVMIKTGERTVLHYFLKPLED 483