Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  155 bits (393), Expect = 2e-42
 Identities = 117/438 (26%), Positives = 205/438 (46%), Gaps = 16/438 (3%)

Query: 36  YEFLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQV 95
           +EF  A  A A++      R+T   ++  V   L+W+ +  ++  A A G++V  G  QV
Sbjct: 14  HEFTEAVEAPAEK--RAIRRITFF-IATAVFILLIWSIFTNIEEIAKAKGQVVPLGHRQV 70

Query: 96  IQSYEQSRLLSIHVRDGQRVEKG---APLLTLDTLGVNQDITRLVSQAEFQTNELIRYRT 152
           IQS     L SI V +G  V+KG   A  +  D+  + +++    +  E +     RY  
Sbjct: 71  IQSQTGGTLASIAVAEGDLVQKGDLIANFVATDSQALKEELQSKQANLELKIE---RYTA 127

Query: 153 LLNDQLLTHDPMFTALPAEQQALI--HENYLSEKNEFDSTLASIT-AEMKVNRTSQAARQ 209
            L ++    +P F A      AL+  H N L+  N+    + +++ +++  +    A+ +
Sbjct: 128 FLEER----EPDFNAYQLGFPALVAQHINALARMNQEKQAIIALSESDVAKSEAELASVE 183

Query: 210 SDIHALLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKS 269
            +I  L     ++ Q L     + + + +  +  LE +++L    R++        VL+ 
Sbjct: 184 QEITPLKDQIRSVEQTLKMMNSVKEQQAVSKLRMLESQQKLDAYIRELKVLEGRRSVLQR 243

Query: 270 QYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQ 329
             ++ E++L   +A    E  EKR  A+ +L  +   L       Q   + SPVDG +Q 
Sbjct: 244 NIDNQEKQLAQKQASLFNEVGEKRTDAQAELLGIVARLKSSDSLVQQNRVTSPVDGIIQS 303

Query: 330 LSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGT 389
           +   + G+V+QP   + +IVP       E ++  +D+GFV  GQ   +K+DAF Y+RYG 
Sbjct: 304 IPNNSAGSVIQPGGTVAVIVPTTPTALLEAKLSPRDIGFVTVGQKARIKIDAFDYSRYGA 363

Query: 390 IDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVI 449
           ID  +  IS  +  DE+ G+ +  QI +   +       + L PGM+  A+I T  + V 
Sbjct: 364 IDGLVKKISPSTDADEKGGVFYKVQIAIDKPYFGDQPDKLALIPGMTGEADIVTGDKTVF 423

Query: 450 DYLLSPIQEYQAEALRER 467
            YL  P+     EA  ER
Sbjct: 424 QYLWKPVFTNVTEAFGER 441