Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  159 bits (403), Expect = 1e-43
 Identities = 118/442 (26%), Positives = 214/442 (48%), Gaps = 39/442 (8%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+    L+    + L+WAY+ +LD   T TG+++ S + QVIQS +   +  ++VR+G  
Sbjct: 29  RLIIWALAALAFSFLVWAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIMKELYVREGMT 88

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTH------------- 161
           V KG PL+ +D      D  +   +       +IR R  LN   ++              
Sbjct: 89  VTKGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRLRAELNSITISDVAADWREQVKIAK 148

Query: 162 DPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKV-NRTSQAARQ------SDIHA 214
            P+    P E     H+    +++E+   L +++ ++++  R  Q  +Q      S I+ 
Sbjct: 149 QPL--QFPPELTESEHDLIERQRDEYSGRLDNLSNQLEILARQIQQKQQETEELASKINT 206

Query: 215 LLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESL 274
           L    + +++ L   + L    ++  VE       LL+ +R V   R EL  L+     L
Sbjct: 207 LTTSFQLVTRELELTRPLADKGIVPEVE-------LLKLERNVNDIRGELSSLRLLRPKL 259

Query: 275 EERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVRERE--------QLEIIRSPVDGT 326
           +        +++        +AR QL  +   LS++ E +        + EI+ SPV+GT
Sbjct: 260 KASQDEAILKRREAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIV-SPVNGT 318

Query: 327 VQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTR 386
           ++ + + TLG V+QP  +++ IVP       E +I+ KD+ F++PG    VKV A+ +TR
Sbjct: 319 IKTVHINTLGGVVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTR 378

Query: 387 YGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHI-MIDGQTVELTPGMSVVAEIKTDK 445
           YG ++  +  IS D+T DE+    +  +++ + + +   DG  + + PGM    ++ T +
Sbjct: 379 YGGLNGVVEHISADTTQDEEGNSFYLVRVRTELSSLTKDDGTLMPIIPGMLTTVDVITGQ 438

Query: 446 RRVIDYLLSPIQEYQAEALRER 467
           R V++Y+L+PI   +  ALRER
Sbjct: 439 RSVLEYILNPILRARDTALRER 460