Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., toxin secretion, membrane fusion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.0 bits (232), Expect = 9e-24
 Identities = 96/414 (23%), Positives = 187/414 (45%), Gaps = 54/414 (13%)

Query: 58  ALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQ--SRLLSIHVRDGQRV 115
           ++ + L V A +L+ Y+     + T  G LV      VI++Y      +  +HV++G  V
Sbjct: 33  SIAILLIVTAIILFLYFSHYARKETVRGYLVPD--KGVIKTYANRIGNVDILHVKEGSDV 90

Query: 116 EKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQAL 175
             G PL+T+    +   +      +E   +EL + +++LN +L  +  +  A        
Sbjct: 91  NAGDPLVTVI---IRSSMASGFELSETLISELKQQQSILNQELDNNIELNAA-------- 139

Query: 176 IHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQV 235
                  E       L+ ++  MKV      +RQ  +     L + ++ ++A +K+ +++
Sbjct: 140 -------ETLRLKKRLSDLSESMKV-----LSRQKQL-----LADKLNIQVAQKKQHDKL 182

Query: 236 KVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQ 295
              G++  L+ + +L     ++ + + E+E L+S   S++  L     Q   E +    Q
Sbjct: 183 YKDGYLSELDYQLQL----SKLIEVKQEVENLESNKISIDRELN----QTHAELVSLPFQ 234

Query: 296 ARLQLASLNQELSKVR------EREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIV 349
             L+ + +++  S ++      E     +IR+   GTV  +SV   G  +   + LM I+
Sbjct: 235 FNLKQSDVHKRQSDIQRQLNEAENSYTFVIRAQESGTVAAVSVVE-GEFIASNRPLMSII 293

Query: 350 PENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGL 409
           P+     AE+ +  +  GFV  G    ++ DAFPY R+G + +E+L + +    D +  L
Sbjct: 294 PKGSSLVAELLLPTRSAGFVKQGDEARLRFDAFPYQRFGFLHSEVLRVDKALLLDGEADL 353

Query: 410 -------VFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPI 456
                  V+  +  L    +   G+   L  GM + A+I  D+R ++D+LL PI
Sbjct: 354 PVKLSEPVYRIKTTLSAQDMQAYGEAFPLKSGMLLEADIVLDRRTLLDWLLDPI 407