Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (385), Expect = 2e-41
 Identities = 116/435 (26%), Positives = 212/435 (48%), Gaps = 25/435 (5%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+    L+  V   LLWA + +LD   T +G+++ S + QVIQS +   +  + VRDG  
Sbjct: 53  RLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRDGDL 112

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLL---THDPMFTALPAE 171
           V KG PL+ +D      D  +   +        IR R  L+  L+   T D        +
Sbjct: 113 VTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAELDSILISDMTSDWREQVKITK 172

Query: 172 QQALIHENYLS--------EKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTEN-- 221
           +  +  ++ +         ++ E+   L +++ ++++       RQ +I  L   T    
Sbjct: 173 KDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLT 232

Query: 222 -----ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYES--L 274
                IS+ L   + L +  ++  VE L+ E+ + +AQ ++   R     LK+  +   L
Sbjct: 233 TSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAIL 292

Query: 275 EERLTGFK-AQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVY 333
           + R   F  A   R  L    + + +L+ +N+     +++    II SPV+GT++ + + 
Sbjct: 293 KRREAVFVYAADLRAQLN---ETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHIN 349

Query: 334 TLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAE 393
           TLG V+QP  +++ IVP       E +IL KD+ F++ G    VKV A+ +TRYG +   
Sbjct: 350 TLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGT 409

Query: 394 LLSISRDSTTDEQLGLVFPAQIQL-KTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYL 452
           +  IS D++ DE+    +  +++  +++ I  DG  + + PGM    ++ T +R +++Y+
Sbjct: 410 VEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYI 469

Query: 453 LSPIQEYQAEALRER 467
           L+PI   +  ALRER
Sbjct: 470 LNPILRAKDTALRER 484