Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  154 bits (388), Expect = 7e-42
 Identities = 106/407 (26%), Positives = 188/407 (46%), Gaps = 9/407 (2%)

Query: 65  VLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTL 124
           V    +W+ +  ++  A A G+++  G  QVIQS+    L SI V +G  V+KG  L   
Sbjct: 40  VFIMFVWSLFTNIEEIAKAKGQVIPLGHQQVIQSFSGGTLASILVSEGDLVKKGDVLANF 99

Query: 125 DTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQALIHENYLSE- 183
             +        L S+      ++ RY   +  +    +  F +       L+ + ++S+ 
Sbjct: 100 IAIDSQAAAEELESKQANLVLKIERYSAFIESR----EANFASYLESHPNLV-KGHISDL 154

Query: 184 ---KNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVKVIGH 240
               NE  + + S  AE+  ++   A+   +I  L     +  Q +   + + + + +  
Sbjct: 155 ERMNNEKQAIIQSSLAEIAKSKAELASLDQEIPPLKHQITSAQQTINMMESIKESQAVSK 214

Query: 241 VEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQL 300
           +  LE +++L    R++     + +VL    E+L+ +L   +A   +E  E R  A+ +L
Sbjct: 215 LTMLESQQKLDSYIRELKSMEGKQQVLARDIENLQRQLEQKQATLLKEVGEARTDAQAEL 274

Query: 301 ASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQ 360
             +   L     + Q   I SPVDG +Q +   + G+V+QP   + +IVP       E +
Sbjct: 275 LGITARLKSSDSQVQQNTITSPVDGIIQSIPNTSSGSVIQPGGTVAVIVPTTPTALLEAK 334

Query: 361 ILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTN 420
           +  +D+GFV  GQ   +K+DAF Y+RYG +D  +  IS  +  DE+ G+ +  QI +   
Sbjct: 335 LSPRDIGFVSVGQKARIKIDAFDYSRYGALDGIVKRISPSTDADEKGGVFYKVQISIDKP 394

Query: 421 HIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           +       +EL PGM+  A+I T  + V  YL  P+     EA  ER
Sbjct: 395 YFGDQPDKLELIPGMTGEADIVTGDKTVFQYLWKPVFTNVTEAFGER 441