Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., secretion protein HlyD from Klebsiella michiganensis M5al

 Score =  138 bits (347), Expect = 4e-37
 Identities = 115/422 (27%), Positives = 201/422 (47%), Gaps = 57/422 (13%)

Query: 54  ARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQ 113
           +R   L L++ +L   +WA++  LD  +T TG+++ S R QVIQ+ +   L  ++VR+G 
Sbjct: 29  SRRLILLLAVMLLVGGVWAWFAVLDEVSTGTGKVIPSSREQVIQTLDGGILTELNVREGS 88

Query: 114 RVEKGAPLLTLDTLGVNQDITRLVSQAEFQTN--ELIRYRTLLNDQLLTHDPMFTALPA- 170
           +V+ G  +  LD      ++    SQA+++ +    IR    +N+Q L       A PA 
Sbjct: 89  KVQAGQVVARLDPTRSESNVGE--SQAKYRASLAASIRLTAEVNNQPLAFPDSLKAWPAL 146

Query: 171 --EQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAA 228
             E+  L H    S K +   +   +   +K+           +++ L +TE +++  AA
Sbjct: 147 LAEETRLYH----SRKEQLSKSTRQLDESLKL-----------VNSELAITERLAKTGAA 191

Query: 229 RKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQRE 288
                               E+L  ++QVA    +   L ++Y               RE
Sbjct: 192 -----------------SNVEVLRLRQQVADISFKKIDLNTRY-----------FVDARE 223

Query: 289 WLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMII 348
            L K   A   +ASL + +    +      +RSPV G V+ + V T+G V+ P   LM I
Sbjct: 224 QLSK---ANADVASLAEVIKGRADSVTRLTVRSPVQGIVKNIKVNTIGGVIAPNGELMEI 280

Query: 349 VPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLG 408
           VP +     E +I  +D+ F++P Q   VK+ A+ Y  YG ++  + +IS D+T DE   
Sbjct: 281 VPVDGRLLIEARISPRDIAFIHPDQQALVKITAYDYAIYGALNGVVETISPDTTQDEAKP 340

Query: 409 LVFPAQIQLKTNHIMID---GQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALR 465
            ++  ++ ++T++  ++   G+   + PGM    +IKT ++ V+DYL+ P    + EALR
Sbjct: 341 DIYYYRVFIRTDYDYLENKSGKRFLIGPGMIATVDIKTGEKTVMDYLVKPFNRAK-EALR 399

Query: 466 ER 467
           ER
Sbjct: 400 ER 401