Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., type I secretion protein HlyD from Herbaspirillum seropedicae SmR1

 Score =  129 bits (325), Expect = 2e-34
 Identities = 114/443 (25%), Positives = 204/443 (46%), Gaps = 52/443 (11%)

Query: 50  PSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHV 109
           P P   V A+T+ L +L  +LW+ +  +D+    +GR+V S  +QVIQ  E   + +I V
Sbjct: 39  PRPRLAVLAVTVLLALL--VLWSVFAPIDMVVRGSGRIVASEHNQVIQHLEGGIVSAILV 96

Query: 110 RDGQRVEKGAPLLTLDTLGVNQD--------------ITRLVSQAEFQTNELIRYRTLLN 155
           R+G  V+KG  L+++  +  N D              I RL ++A   ++        + 
Sbjct: 97  REGAAVKKGQTLISISDVRANADLGEGRVKILGLRAKIARLSAEASGASS------LQMP 150

Query: 156 DQLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHAL 215
           D L   DP   A+ +EQ A            F +  + +  EM V R   A RQ+++   
Sbjct: 151 DDLERGDP---AVQSEQAA------------FAARSSKLMQEMSVLREQSAQRQAELGEA 195

Query: 216 LQLTENISQRLAARKKLNQVKVIGH--VEYLEQEKELLEAQRQVAQQRAELEVLKSQYES 273
           +   ++ +  L   ++  Q K+I    V     + E ++A  +V   +++L    +    
Sbjct: 196 ISRQKSQASELELAQR--QYKLIHDMLVRNAASQLEDIQAASRVQDAQSKLAATNAMIPR 253

Query: 274 LEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVRE-------REQLEIIRSPVDGT 326
           L   +   +A++       R  AR +L +   EL++++E       R     +++P+DG 
Sbjct: 254 LNAAIAEAQAKQGEAASRFRSDARTELTAAETELARLQEEIKSRNDRVSRSEVKAPMDGV 313

Query: 327 VQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTR 386
           V ++ + T+G V++P   ++ + P +     E +I   D   +  G    VKV A+ Y  
Sbjct: 314 VNRVMINTIGGVVRPGDPIIEMTPSDDKLVIEARISPTDRAELVTGARARVKVSAYDYGV 373

Query: 387 YGTIDAELLSISRDSTTDE---QLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKT 443
           YG +D  +  IS D+  DE   +    +  +I++K  H  +  Q + L PGM+  A+I  
Sbjct: 374 YGAMDGVVTEISADTVPDEGSPRGERFYRLKIEVKRGHDELQ-QKLALMPGMTASADIIV 432

Query: 444 DKRRVIDYLLSPIQEYQAEALRE 466
            +R V  YL+SP+  +   ALRE
Sbjct: 433 GRRTVWQYLMSPLSRFGQGALRE 455