Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., type I secretion membrane fusion protein, HlyD family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  165 bits (418), Expect = 3e-45
 Identities = 122/440 (27%), Positives = 218/440 (49%), Gaps = 18/440 (4%)

Query: 37  EFLPAHLALAQRPPSPFARVTALTLSLGVLAAL-LWAYWGKLDVQATATGRLVVSGRSQV 95
           +F+    A   R   P+A + +  +  GV A   +WA +  LD      G+++ S R QV
Sbjct: 18  QFMSEVDAALHRAGHPYAYLLSCAI-FGVFAIFFVWAAFAPLDEVTRGQGQVIPSQRVQV 76

Query: 96  IQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLN 155
           IQ+ E   L  + V + Q VEKG  LL +D           + ++      + R    L 
Sbjct: 77  IQNLEGGILRELLVHESQIVEKGDVLLRIDNEAAESFYRDALGKSVEHQIAIAR----LE 132

Query: 156 DQLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHAL 215
            +L   DP++ A    +   + EN   + + + +    +  E +V       ++ +I  +
Sbjct: 133 AELEGRDPVYPAELMTEWPQVVEN---QADVYRARRQQVAVEQRVLEAQLHQKEQEIEEM 189

Query: 216 L----QLTEN----ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVL 267
                QL ++    + QR  AR  L + ++   VEYL  E++++  + +++     +   
Sbjct: 190 TSRKRQLEDSLRVAVEQREIARP-LMEKQIYPRVEYLSLEQKVISLRGEISSLAISIPKA 248

Query: 268 KSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTV 327
           ++  +  +ERL   KAQ + E LE+  + R +L SL + LS   +R     +RSPV GTV
Sbjct: 249 RAAADEAKERLAFRKAQIRSEALEELNKRRGELNSLRETLSAGGDRVTRTDVRSPVRGTV 308

Query: 328 QQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRY 387
           ++L + T+G V++P + +M IVP +     E +I   D+ F++P Q   VK+ A+ Y+ Y
Sbjct: 309 KRLIINTVGGVIKPGEPIMEIVPLDDTLLIEARIRPADIAFLHPDQKAVVKITAYDYSIY 368

Query: 388 GTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRR 447
           G ++  +  IS D+  D +    +  +++ + + I+  G+ + + PGM+   +I T K+ 
Sbjct: 369 GGLEGVVEQISADTIEDRKGEFYYLVKLRTRKSAIVYRGEALPIMPGMTATVDILTGKKT 428

Query: 448 VIDYLLSPIQEYQAEALRER 467
           V+DYLL PI + Q  ALRER
Sbjct: 429 VLDYLLKPILKAQQNALRER 448