Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., putative hemolysin secretion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 74.7 bits (182), Expect = 5e-18
 Identities = 84/425 (19%), Positives = 180/425 (42%), Gaps = 33/425 (7%)

Query: 52  PFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQS--RLLSIHV 109
           P A    + L++ V AAL   +   +      TG++ ++ ++  ++    S   LL +  
Sbjct: 2   PMAFGKWVALAVIVFAALFLLFGWIIKYPDMVTGQIKINAQNPTVRLVANSTGNLLLLSH 61

Query: 110 RDGQRVEKGAPLLTLDTLGVNQDITR---LVSQAEFQTNELIRYRTLLNDQLLTHD--PM 164
           +  + V+KG  +  +      +D+ +   L+++ +F    L+  +    D++   +  P 
Sbjct: 62  KAQEEVKKGEYIAVVQNPASTEDVRKIADLINRIDFDGTHLLALKDTFPDKVYLGEINPQ 121

Query: 165 FTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQ 224
           + A  A  +A    +YL ++N ++    +IT  ++  +      +    A     +   +
Sbjct: 122 YYAFLAALKAQC--DYL-QQNVYEKQRENITTSIEWKKKIVREAEDSQKAAKDRMDVARK 178

Query: 225 RLAARKKLNQVKVIGHV--------EYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEE 276
            L     L+Q ++  +          YL   +E+    R++A  R ++     + E LE 
Sbjct: 179 WLKRYVSLDQQEIATYEYETDQIKNNYLTTVQEVQNINREIASTRMQITEAYHRLEQLEV 238

Query: 277 RLTGFKAQKQREWLEKRRQARLQLASLNQEL-SKVREREQLEIIRSPVDGTVQQLSVYTL 335
                      E LEK R+ +++L S +Q L + +   EQ  + ++P DG V+ L   + 
Sbjct: 239 -----------EQLEKERELKVELLSTHQNLIANMAAWEQKYVFKAPFDGKVEFLKFISD 287

Query: 336 GAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELL 395
           G  +Q  + +  ++P+      +V +     G V     V +K++ +PY  YG I+  + 
Sbjct: 288 GQFVQAGEAVFGVIPKENHIYGQVLLPANGAGKVKENSKVVIKLENYPYMEYGYIEGYVS 347

Query: 396 SIS---RDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYL 452
           SIS   +   T E+    +   ++L         +T++    +   A+I    RR+I+ L
Sbjct: 348 SISLVTQTQKTGEKTIETYLINVELPNGLTTNYEETLDFKYELGGTADIIVKDRRLIERL 407

Query: 453 LSPIQ 457
              ++
Sbjct: 408 FDNLR 412