Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  153 bits (386), Expect = 1e-41
 Identities = 115/435 (26%), Positives = 215/435 (49%), Gaps = 25/435 (5%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+    L+  V   LLWA + KLD   T +G+++ S + QVIQS +   +  + VR+G  
Sbjct: 29  RLIIWALAAMVACFLLWAGFAKLDKVTTGSGKVIPSSQVQVIQSLDGGIMQELFVREGDI 88

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTH--DPMFTALPAEQ 172
           V KG PL+ +D      D  +   +        IR R  L+  L++         +   +
Sbjct: 89  VTKGQPLVRIDDTRFRSDFAQQEQEVLGLKTNAIRMRAELDSILISDMTSDWREQVKITK 148

Query: 173 QALIHENYLSE---------KNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTEN-- 221
           +AL+  + ++E         + E++  L +++ ++++       RQ +I  L   T    
Sbjct: 149 KALVFPDSITEAEPALVRRQQEEYNGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLT 208

Query: 222 -----ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYES--L 274
                IS+ L   + L +  ++  VE L+ E+ + +AQ ++   R     LK+  +   L
Sbjct: 209 TSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAIL 268

Query: 275 EERLTGFK-AQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVY 333
           + R   F  A   R  L    + + +L+ +N+     +++    +I SPV+GT++ + + 
Sbjct: 269 KRREAVFVYAADLRAQLN---ETQTRLSRMNEAQVGAQDKVSKAVITSPVNGTIKTVHIN 325

Query: 334 TLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAE 393
           TLG V+QP  +++ IVP       E +IL KD+ F++ G    VKV A+ +TRYG +   
Sbjct: 326 TLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGT 385

Query: 394 LLSISRDSTTDEQLGLVFPAQIQL-KTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYL 452
           +  IS D++ D++    +  +++  +++ I  DG  + + PGM    ++ T +R +++Y+
Sbjct: 386 VEHISADTSQDDEGNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYI 445

Query: 453 LSPIQEYQAEALRER 467
           L+PI   +  ALRER
Sbjct: 446 LNPILRAKDTALRER 460