Pairwise Alignments

Query, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  270 bits (690), Expect = 2e-76
 Identities = 180/550 (32%), Positives = 296/550 (53%), Gaps = 13/550 (2%)

Query: 175 IALQIFALVSPML------FENVIDKVLVGRSLSSLHVLALAMLALAIA--EPAYSYLRN 226
           I   +FA   PML      F + + K    + +    VL + +L + IA  +   S+L N
Sbjct: 32  IGFVLFASSQPMLADMLKHFLDALQKPNDTQFMGVSLVLGVPLLIVLIAVYQGIGSFLGN 91

Query: 227 TVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVR-EMAQIRQFLTGSTLML 285
                +A  V  +L   L+ +L+ LP  YF    +G +I+R+   +  +    T +  ++
Sbjct: 92  YYLAKVARGVVHDLRCALFDNLLTLPNRYFDNHNSGHLISRITYNVTMVTGAATDAIKVV 151

Query: 286 LLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANATTF 345
           + + + V      + +    +T +++  L +  +L   A    RK+ +    +  + T  
Sbjct: 152 IREGLTVVFLFGYLLYSNWKMTLVLLAILPVIAILVSSASKKFRKQSKKIQVAMGDVTHV 211

Query: 346 LTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALL 405
            +E + G   +++   E   +E++ +  +  +NRS    ++  I    + LV  +  A+L
Sbjct: 212 ASETIQGYRVVRSFGGESYEIERFHKASADNMNRSLGMTRTQSIYTPMLQLVIYIGMAVL 271

Query: 406 LWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPR 465
           ++  +   L+G+ + G+LVA+   AG + +P+ +L+++    Q  L A   + + LDE  
Sbjct: 272 MY--LVLYLRGDASAGELVAYITAAGLLPKPIRQLSEVSATIQKGLAAADSIFEQLDEEP 329

Query: 466 ENSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTL 525
           E    G   +  ++G +E  N+ F+Y      VL ++S   + GQ I + G SGSGKSTL
Sbjct: 330 EVDT-GTKEMARVNGRLEVRNLSFQYPGTEKIVLDDISFTAEEGQMIALVGRSGSGKSTL 388

Query: 526 TRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCK-PQA 584
             L+ R Y    GQ+L+DG+D+      +LRR++++V Q+  LF+ SV +NI       A
Sbjct: 389 ANLIPRFYHHDQGQILLDGVDVEQYKLTNLRRHIALVTQQVTLFNDSVTNNIAYGDLADA 448

Query: 585 SDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLD 644
             E +R AA+ A A  FIE +P G++  VGE G  LSGGQRQR+A+ARALL N  +L+LD
Sbjct: 449 PFESVRKAAEDAYAAEFIEQMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNAPLLILD 508

Query: 645 EATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEEL 704
           EATSALD  SE  I + +D++ +GRT + IAHRL+TI  AD I ++DKG++ E GTH EL
Sbjct: 509 EATSALDTESERHIQAALDQVIKGRTTLVIAHRLSTIEKADLILLMDKGRIVERGTHAEL 568

Query: 705 LAQQGLYAKL 714
           LA  G YA+L
Sbjct: 569 LALNGFYARL 578