Pairwise Alignments

Query, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., Lipid A export ATP-binding/permease protein MsbA from Acidovorax sp. GW101-3H11

 Score =  303 bits (777), Expect = 2e-86
 Identities = 199/573 (34%), Positives = 318/573 (55%), Gaps = 30/573 (5%)

Query: 164 KSQLRDVFLYAIALQIFALVSPMLFENVIDKVLV----GRSLS-SLHVLALAMLAL-AIA 217
           + QL   F   +A     LV P L   ++D +L+    G+ +   L +L L+ L L A+A
Sbjct: 179 RKQLATGFALTLASTAATLVPPYLTIPLMDDILIPFQNGQKIEPGLVMLYLSGLLLSALA 238

Query: 218 EPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARV-REMAQIRQ 276
               S+ R  +   ++ ++ A+L    Y HL+ L L YF  ++TG ++AR+  E  +I  
Sbjct: 239 AWGLSWARTYILALVSERIGADLRTTTYEHLLRLSLDYFGGKRTGDLMARIGSETDRINV 298

Query: 277 FLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLV-IYFVLWLIAGPLIRKKVESE 335
           FL+   L  + D++ + +  A++F   S   WL + +LV + F+ W+I    +R ++ + 
Sbjct: 299 FLSLHALDFVTDVLMIMMTAAILF---SINPWLALVTLVPLPFIGWMIH--TVRDRLRTG 353

Query: 336 YESD----ANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAG 391
           +E      +  T  L + + GI  +K  A E R  ++++      L  +    K+  +  
Sbjct: 354 FEKIDRVWSEVTNVLADTIPGIRVVKAFAQEKREAQRFRDANQHNLEVNDKLNKTWSLFT 413

Query: 392 QAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTL 451
             ++L+ ++   ++  +G+  V + +IT G L AF    G     +  +++I    Q   
Sbjct: 414 PTVSLLTEIGLLVVWAFGIWLVSRNQITVGVLTAFIAYIGRFYGRLDSMSRIVSVTQKAA 473

Query: 452 IALRRVGDILD------EPRENSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLK 505
              +R+ DILD      +P +  K     V ++ G I    + FRY   A  V+  L L 
Sbjct: 474 AGAKRIFDILDHVSNVPDPAQPVK-----VDKVQGAISMQGVGFRYGSRA--VIKGLHLD 526

Query: 506 IKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQE 565
           I+PG+ IG+ G SGSGKSTL  L+ R Y    G + VDG+D+        RR++ +VLQE
Sbjct: 527 IRPGEMIGLVGHSGSGKSTLVNLISRFYDVSDGSIQVDGIDIRRFAVADYRRHIGLVLQE 586

Query: 566 SILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQR 625
             LF G++A+NI   KP+A+ EEI  AA+ A A  FI  LPHG++  VGE+G  LSGG+R
Sbjct: 587 PFLFFGTIAENIAYGKPEATREEIVAAARAAHAHEFILRLPHGYDSLVGERGQGLSGGER 646

Query: 626 QRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHAD 685
           QRI++ARALL++PRIL+LDEATSA+D  +E  I   +D + +GRT I+IAHRL+T+R AD
Sbjct: 647 QRISIARALLIDPRILILDEATSAVDTETEKEIQKALDNLVQGRTTIAIAHRLSTLRKAD 706

Query: 686 NIFVLDKGQVAESGTHEELLAQQGLYAKLWTQQ 718
            + V+D+G+V E G H+EL+ +QG Y +L+  Q
Sbjct: 707 RLVVMDRGEVVEVGPHDELMEKQGAYWRLYEAQ 739