Pairwise Alignments

Query, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  499 bits (1285), Expect = e-145
 Identities = 264/679 (38%), Positives = 426/679 (62%), Gaps = 7/679 (1%)

Query: 46  QLKHALGVSYANLTDMEMREAADYL---GLKSQITKLSIQAFNTLPLPALIEYQGGWKVM 102
           Q++  +   Y  L  + ++E A  L    L+SQI +L +     +PLPALI ++ G  V+
Sbjct: 319 QVQRVIEEQYRRLKSISLQELAVLLEMQALRSQILQLRLVDLPRVPLPALIAWEEGHAVL 378

Query: 103 IQTDDNGWTAYDPATDSLHTLSFTSAEST-AHYKVMLIADESLSVKEVKFGLSWFAPSIL 161
              D    T  DP    L TLS    +    +   +L+A ++   +  +FGLSWF PSI 
Sbjct: 379 YAVDATSITFADPR-QGLITLSLAEFQQRWGNAGTILLATKTQFTQSQRFGLSWFWPSIQ 437

Query: 162 RQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAY 221
           R + +L +V + ++ +Q+F L +P++ + VIDKV+   SL++L+  A+ ++ L + +   
Sbjct: 438 RYRVRLIEVLIASLVVQLFTLANPLIIQQVIDKVIGQGSLNNLNSFAVLLVILGVFQGLL 497

Query: 222 SYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGS 281
           S LR  +F    ++++ +L   +   L+ LPL YF++R  G++ +RV+E+ +IR FLTG+
Sbjct: 498 SSLRTYLFADTTNRIDLKLGSDIIDRLLKLPLRYFERRPVGELSSRVQELEKIRSFLTGT 557

Query: 282 TLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDAN 341
            L  ++D +F  +++ VM  Y+  LT + + ++ I+  +   A P++R+++  + E +A 
Sbjct: 558 ALTTVMDAMFSVIYILVMLVYSWFLTLVALSTVPIFVAITFFASPVVRRQLREKAERNAE 617

Query: 342 ATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLT 401
             + L E ++GI+T+K    E +   QWQ   ++ +   F    +   A        +L+
Sbjct: 618 TQSQLVEVLSGIQTVKAQNIELKARWQWQERYARYIAAGFRNINTSTAASSLTNFFNQLS 677

Query: 402 AALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDIL 461
             L+LW GV  V   +++ GQL+AF +++G+VTQP+LRLAQ+WQ+FQ T ++L R+ DI+
Sbjct: 678 GLLVLWVGVYLVFDNQLSLGQLIAFRIISGYVTQPLLRLAQLWQNFQETALSLERLADIV 737

Query: 462 DEPRENSK--QGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSG 519
           D P+E+    QG   +P ++G +EF N+ FR+ +  P  L+N++L+I  G+++G+ G SG
Sbjct: 738 DTPQESDDDDQGKIPMPMINGKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSG 797

Query: 520 SGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRL 579
           SGKSTL +LL RLY P  G++L+DG D++  +  SLRR + +V Q+S+LF G+V +NI L
Sbjct: 798 SGKSTLMKLLPRLYSPLEGEILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISL 857

Query: 580 CKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPR 639
            KP A+ +EI  AA+ AGA  FI  LP G+N  VGE+G ALSGGQRQRIA+AR +L NP+
Sbjct: 858 TKPNATTDEIITAAKAAGAHDFIMTLPLGYNTRVGERGGALSGGQRQRIAIARTVLQNPQ 917

Query: 640 ILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESG 699
           +L+LDEATSALDY++E  +  N+ +  RG+TV  I HRL+T+RHAD I V+DKG + E G
Sbjct: 918 LLILDEATSALDYDTERQVSINLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQG 977

Query: 700 THEELLAQQGLYAKLWTQQ 718
           +H+EL+  +G Y  L+ QQ
Sbjct: 978 SHDELMELRGRYFCLYRQQ 996