Pairwise Alignments

Query, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  280 bits (717), Expect = 1e-79
 Identities = 186/552 (33%), Positives = 311/552 (56%), Gaps = 18/552 (3%)

Query: 178 QIFALVSPMLFENVIDKVLVG-RSLSSLHVLALAMLALA-IAEPAYSYLRNTVFGHLASQ 235
           ++  +V P+ +++ +D + V  R+   L +  +A   LA +   A++ +R+ +F  +  +
Sbjct: 53  KLAGVVVPLFYKHAVDALSVPERAAIVLPLGVIAAYGLARLGNLAFTEIRDLLFARVIER 112

Query: 236 VNAELSGRLYRHLVGLPLTYFKQRQTG---QIIARVREMAQI--RQFLTGSTLMLLLDLI 290
               LS R +RHL GL L +   RQTG   ++I R     ++  RQF+  +   L+ +L+
Sbjct: 113 AIHVLSLRTFRHLHGLSLRFHLDRQTGGLSRVIERGTRAIEVVLRQFVLRAGPSLI-ELV 171

Query: 291 FVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYES-DANATTFLTEA 349
            V   L  ++ +  T   +++G+L +Y V W +A    R        + DA A++   ++
Sbjct: 172 MVCGVLWTLYDW--TYAVVMVGALAVY-VAWTLAITEWRLDFRRSMNTHDAEASSKAIDS 228

Query: 350 VTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSG--LIAGQAIALVQKLTAALLLW 407
           +   ET+K    E    +++ R LS     +  + +S   L  GQ+  +   L A +++ 
Sbjct: 229 LINYETVKYFGNEEHEAKRFDRALSAYEEVAVKSHRSLSLLNVGQSAIISLSLVAVMIM- 287

Query: 408 WGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPREN 467
                +  G +TPG  V  N     +  P+  L  ++++ +  L+ +  +  ++D P E 
Sbjct: 288 -AAVDIRGGRMTPGDFVLVNTYLLQLYVPLNFLGMVYREVKQGLVDMEVLFGLIDRPPEV 346

Query: 468 SKQGLASVPELDGG-IEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLT 526
           +    A+   + GG + F  +RF Y+ +  EVL  +SL+I  G  + V G SG+GKSTL+
Sbjct: 347 ADPANAADLVVRGGAVRFEGVRFAYNPER-EVLKGVSLEIPAGGTLAVVGHSGAGKSTLS 405

Query: 527 RLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASD 586
           RLL R Y    G+VL+DG DL      SLRR + +V Q+++LF+ ++  NI   +P AS 
Sbjct: 406 RLLFRFYDVTGGRVLIDGQDLRDVTQASLRRAIGIVPQDTVLFNDTIGYNIAYGRPGASR 465

Query: 587 EEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEA 646
           +E+  AA+LA    F++ L +G++  VGE+G  LSGG++QR+A+AR +L +P IL+LDEA
Sbjct: 466 QEVERAARLAAIHDFVQSLKNGYDTQVGERGLKLSGGEKQRVAIARTILKDPAILILDEA 525

Query: 647 TSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLA 706
           TSALD ++E  I   + ++ RGRT + IAHRL+T+  AD I VLD G+VAESG+H++LL 
Sbjct: 526 TSALDSHTEREIQGALRDVSRGRTTLVIAHRLSTVIDADRILVLDGGRVAESGSHDDLLR 585

Query: 707 QQGLYAKLWTQQ 718
            +GLYA LW +Q
Sbjct: 586 AEGLYAALWRKQ 597