Pairwise Alignments

Query, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  281 bits (720), Expect = 6e-80
 Identities = 199/690 (28%), Positives = 333/690 (48%), Gaps = 12/690 (1%)

Query: 28  IEAVVYAGQQFHKKSTSSQLKHALGVSYANLTDMEMREAADYLGLKSQITKLSIQAFNTL 87
           ++++V   + F    +S  L   L +S + LT   + +AA   GL +++T+  +   + +
Sbjct: 26  LDSLVLLTEYFGSPCSSESLAAGLPLSGSILTPELVPQAAGRAGLAAKLTRKGLDQISPI 85

Query: 88  PLPALIEYQGGWKVM---IQTDDNGWTAYDPATDSLHTLSFTSAESTAHYKVMLI----- 139
            LP ++  +     +   I  D +      P T     LS  + E+     + L+     
Sbjct: 86  LLPCILLLKDKNACLLREIDIDKDRAVIQLPETGGEEELSIEALEAMYVGYLFLVKQQYR 145

Query: 140 ADESLSVKEVKFGLSWFAPSILRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGR 199
            D  L +        W   ++       RD  + ++ + +FALVSP+   NV DKV+   
Sbjct: 146 GDMGLDLHLHDSRTHWLIQTLKDSAPIYRDALIASVLVNLFALVSPLFIMNVYDKVVPNL 205

Query: 200 SLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQR 259
           +  SL VLA+      I +     LR  +      +V+  +S RL+   +G+PL   +  
Sbjct: 206 AFESLWVLAIGAGIAYIFDLIMRQLRAYLIDVAGKKVDIIVSSRLFAKAIGIPLEK-RSP 264

Query: 260 QTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWL-VIGSLVIYF 318
             G +  ++ E   IR+ LT +T+  L+DL F   F+ +++  A  L  + VIG  +I  
Sbjct: 265 SIGGMARQLGEFDSIREILTSATITTLVDLPFALFFMLIIYIVAGDLAIIPVIGGCIIIG 324

Query: 319 VLWLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLN 378
              L+  P ++  +E   +  +     L E++  IE+IK++  E    + WQ+++    N
Sbjct: 325 YT-LLMQPRLKAAIEESNKFSSLKHGHLIESLASIESIKSSGAEGLVQKSWQQMIGHTAN 383

Query: 379 RSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVL 438
                +K             +L+   ++  GV  V   +I+ G ++A  +L+     P+ 
Sbjct: 384 WQLKVKKISTSVTNVANFTVQLSVVCVVILGVYRVADNDISMGGIIAAVILSSRAISPMA 443

Query: 439 RLAQIWQDFQHTLIALRRVGDILDEPRENSKQG-LASVPELDGGIEFSNIRFRYHQDAPE 497
           +LA +     HT  ALR++  I+ +  E   +G L S   L G I   ++ F Y      
Sbjct: 444 QLAGLMTRGNHTASALRQLDQIMTQEDEFENKGHLVSKHRLKGQINADHVSFNYPGSERP 503

Query: 498 VLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRR 557
           VL  +SL I PG+ I + G +GSGKSTL +LL  LY P  G +  DG+D A   P  LRR
Sbjct: 504 VLHPMSLSIAPGERIAIIGRNGSGKSTLAKLLVGLYQPTKGSLRYDGLDSAQIHPTDLRR 563

Query: 558 NMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKG 617
           N   + Q+  LF G++ DNI     Q ++ ++  A QL+G   F +    G +Q VGE G
Sbjct: 564 NFGYLPQDITLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVNQFTDIETEGLDQQVGEGG 623

Query: 618 AALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHR 677
            +LS GQRQ IALARA L +P +LL+DE T++LD  +E   +  M  + + RT++ I H+
Sbjct: 624 QSLSRGQRQTIALARATLNDPPVLLMDEPTASLDARAEKQFIRAMRNVSKERTLLLITHK 683

Query: 678 LNTIRHADNIFVLDKGQVAESGTHEELLAQ 707
           ++ +   D I VLD+G +   G  E++L Q
Sbjct: 684 MHLLNLVDRILVLDRGHLVADGPKEQVLNQ 713