Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  212 bits (540), Expect = 6e-59
 Identities = 147/399 (36%), Positives = 225/399 (56%), Gaps = 24/399 (6%)

Query: 151 LLGQNKGQFSLEAKETLSRFRP----LLERAISDIEHKEELQKLVEIRTRELRLAQKLAE 206
           L G ++   +L  +  LS  R     L++  I DI H+    K  E R RE   A +LA 
Sbjct: 546 LFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISHR----KAAERRLREQ--ADQLAV 599

Query: 207 QANQSKSNFLAMMSHELRTPLNAVLGLIDILR----GELTSYQVELLEQMENSAELLLII 262
            AN+ KS FLA MSHELRTPLN++L L D LR    G L   QV   + +  +   LL +
Sbjct: 600 -ANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEKQVRHADIIHRAGHELLQL 658

Query: 263 INDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGVHFYVQSNKNPTLEYYT 322
           IND+LDL++IESGH  L    L+L + L +       +A+ KG+   ++ + +  +   +
Sbjct: 659 INDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEVDADVPVTLNS 718

Query: 323 DSARLTQILFNIVGNAIKFTKQGQVDVVLDY--TKDG----VVFRVKDTGIGIEKNRVEQ 376
           D ARL QIL N++ NA+KFT+QG+V+++      +DG    +  +V+D+GIGI K++ E+
Sbjct: 719 DRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQLQVRDSGIGIAKDQHER 778

Query: 377 LFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFTLYIPLQSRLK 436
           +F  F Q D SI+R+YGGTGLGLAIT+ LVE++GG + VESE G G TFT+ +P+ +   
Sbjct: 779 IFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFTVVLPIATVSG 838

Query: 437 NIKPSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN 496
               +    Q     +   +L++ED      V+  +    G+   I   G Q +E L + 
Sbjct: 839 ASTQALLPPQPQRRGRGPGLLIIEDDTDFASVVAEVGQSHGFTSLICNTGEQGLEALRRE 898

Query: 497 HVFDLVLMDISMPIMDGIAATKILR--DKHIEIPIIALT 533
           H F  V++DI +P + G    + LR  ++H  +P+I ++
Sbjct: 899 H-FAAVILDILLPDISGWQIHRELRGDERHQGMPVIIIS 936



 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 440  PSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVF 499
            PS + S  +       +LV ED +     +   L++LG  V  A +  +A+E  +++  F
Sbjct: 1098 PSAAVSLHLAAPGQRVLLVDEDVRLIYS-LTAQLDELGIQVVPATSAAEALERFDED-AF 1155

Query: 500  DLVLMDISMPIMDGIAATKILRDKH-IEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIR 558
            DLV++D+S P  +G    + L+  H  + PI+AL        ++ C  +G +++++KP+ 
Sbjct: 1156 DLVVLDMSRPGAEGPELARRLKQDHDCQAPIVALVGANDEGARERCSASGADEVLIKPVE 1215

Query: 559  SKDIMEVVKRFLN 571
            +  + E+++R L+
Sbjct: 1216 ATALRELLRRRLD 1228



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 456  ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGI 514
            +L+VE     +++I+    +LGY VT+A +   +  L      F +V++D  +    G+
Sbjct: 978  LLLVEAEPRRRVLIRDYFERLGYSVTLAGSS-DSARLAYAEQTFSVVVVDSELADGSGL 1035