Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  206 bits (525), Expect = 4e-57
 Identities = 145/396 (36%), Positives = 221/396 (55%), Gaps = 26/396 (6%)

Query: 194 RTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDI-LRGELTSYQVELLEQM 252
           R +EL  A++ A QA+++KS+FLA MSHE+RTP+NAVLGL+ + L+ EL     + LE+ 
Sbjct: 519 REQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPPRPRDYLEKT 578

Query: 253 ENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKL-DQSLVYHRQIAQDKGVHFYVQ 311
           + +A+ LL ++NDILD S+IE+G   L      L++ L D   +   Q+ Q K +    Q
Sbjct: 579 QQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQV-QQKDIELVYQ 637

Query: 312 SNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQV--DVVLDYTKDGVV---FRVKDTG 366
              +   +   DS RL QIL N++ NAIKFT++G +   +  D   DG       ++D+G
Sbjct: 638 VAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSG 697

Query: 367 IGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFT 426
           IG+   +   +F  F QAD+SI+R YGGTGLGLAIT+ LV LM G I+V S  G+G+TFT
Sbjct: 698 IGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFT 757

Query: 427 LYIPLQSRLKNIKPSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENG 486
           + + L       +P    S          +L+VED  T+++V   LL  LG +VT   NG
Sbjct: 758 IDVQLGFDATKYRPGARFS-------GVRVLLVEDNHTSRLVFSELLRDLGCEVTALNNG 810

Query: 487 LQAVELLEK--NHVFDLVLMDISMPIMDGIAATKILR--DKHIEIP-IIALTAHTAG--- 538
           L A++ +E+     FD++L D  +P +DG+     +R  D     P II +TA +     
Sbjct: 811 LTAMKTIERMAPDSFDVLLADWQLPGLDGLELASWIRHLDSLSRQPGIIIVTAFSQAMLE 870

Query: 539 ---SDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFLN 571
                ++   DA +   V + + S+ +  V++R  N
Sbjct: 871 AQLKHREEEFDATLIKPVTREMVSRCLQSVLERHNN 906



 Score = 93.6 bits (231), Expect = 4e-23
 Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 3/119 (2%)

Query: 456  ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIA 515
            +L+VED  TN++V   LL +LG +V  A +G QA++LL +   FDLVLMDI MP MDG  
Sbjct: 926  LLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQ-FDLVLMDIQMPGMDGYQ 984

Query: 516  ATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFLNP 572
             T+ +R++ +  ++PIIA+TA+    DKQ C DAGMN  + KP    ++   + ++L+P
Sbjct: 985  TTRKIRNELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLLQYLSP 1043