Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 903 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  202 bits (515), Expect = 4e-56
 Identities = 130/387 (33%), Positives = 223/387 (57%), Gaps = 18/387 (4%)

Query: 197 ELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGELTSYQVELLEQME--N 254
           EL+ A+  AEQA+ +K++FLA MSHE+RTPLN ++G  D++  + T       + M    
Sbjct: 385 ELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQVMRIFE 444

Query: 255 SAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGVHFYVQSNK 314
           +++ L +II+DILD S+IE+   +L    L + + +          A +KG+     +  
Sbjct: 445 ASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQA 504

Query: 315 NPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTK--DGVV---FRVKDTGIGI 369
            P +    D+ RL Q+L N++ NA+KFT  G V++++      D +V     V DTGIGI
Sbjct: 505 TPPV-LIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGI 563

Query: 370 EKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT--FTL 427
                + LF  F QAD +I+R +GGTGLGLAI++ +V+ M G ++++S+ G+G+T  F +
Sbjct: 564 SPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEV 623

Query: 428 YIPLQSRLKNIKPSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGL 487
            +P+  RL           Q+   ++  ILVV+D + N+ + + +L + G+DV +A++G 
Sbjct: 624 ELPVAERL----DIERLDAQVHCSRSVKILVVDDVEMNRDLCKTMLTRAGHDVDLADSGA 679

Query: 488 QAVELLEKNHVFDLVLMDISMPIMDGIAATKILR---DKHIEIPIIALTAHTAGSDKQNC 544
            A+ ++  +  +DLV MD+ M  MDG+ AT+ +R     + ++PIIALTA+      +  
Sbjct: 680 TAIAMV-ASRTYDLVFMDVQMGEMDGLEATRRIRALGHAYRDVPIIALTANVLPEQVERY 738

Query: 545 IDAGMNDIVLKPIRSKDIMEVVKRFLN 571
             AG++  + KPI   +++  V R+++
Sbjct: 739 KAAGVDGHLGKPINRAELLACVARWID 765