Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  235 bits (600), Expect = 7e-66
 Identities = 168/477 (35%), Positives = 262/477 (54%), Gaps = 27/477 (5%)

Query: 117  KLDEFACLMGSIDKPVYSALITGIQAQISDSVLILLGQNKGQFSLEAKETLSRF---RPL 173
            K +EF  L+ +ID+ V+      +Q      +   +G    +F +  K  +  +   R  
Sbjct: 619  KSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSGMYHWVLSRGR 678

Query: 174  LERAISDIEHKEEL---QKLVEIRTRELRL--AQKLAEQANQSKSNFLAMMSHELRTPLN 228
            +    SD + K  +   + +   ++ E+ L  A++ AE AN  KS FLA MSHE+RTP+N
Sbjct: 679  VVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMN 738

Query: 229  AVLGLIDIL-RGELTSYQVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLE 287
            A++G++ +  R +LT  Q + L++   SA+ LL IINDILD S+IE+G   L      L+
Sbjct: 739  AIIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLD 798

Query: 288  KKLDQSLVYHRQIAQDKGVHFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQV 347
            K LD +L  +   AQ+KGV   + +     L    D  RL Q+L N++ NA+KFT+ G++
Sbjct: 799  KVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEI 858

Query: 348  DVVLDYTKDG-----VVFRVKDTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAIT 402
            ++  +   +      + F V+DTGIGI K + E LF  F QAD S TR YGGTGLGL+I+
Sbjct: 859  ELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSIS 918

Query: 403  KHLVELMGGTIQVESEFGIGTTFTLYIPLQ-SRLKNIKPSTSSSQQIVNVKNHHILVVED 461
            KHLV +MGGT+QV+SE G+G+TF+  I  + +    +KP     + I N+K    LVV+D
Sbjct: 919  KHLVSMMGGTMQVQSELGVGSTFSFTISFEIAEEAEVKP-LIVPEVIGNLKT---LVVDD 974

Query: 462  TKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAATKIL- 520
              T   +    +    +DV  A NG +A+  LE   V DL+L+D  MP MDG+   K L 
Sbjct: 975  NPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPV-DLLLLDWMMPEMDGVEVIKALD 1033

Query: 521  ---RDKHIE--IPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIM-EVVKRFLN 571
                D  +E    II +TA+ +   K++  D  +  ++ KP ++  +  E++  F++
Sbjct: 1034 AMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFDEIIAAFID 1090



 Score = 96.7 bits (239), Expect = 5e-24
 Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 3/117 (2%)

Query: 456  ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIA 515
            IL+VED   NQ V   LL   GY+V +AENG  A+++++    +D VLMDI MP+MDG+ 
Sbjct: 1112 ILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQ-YDAVLMDIQMPVMDGLT 1170

Query: 516  ATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
            ATK LR ++   E+P+IA+TAH    D++  + AGMN  + KPI   ++ + + +++
Sbjct: 1171 ATKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227