Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  221 bits (562), Expect = 1e-61
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 13/386 (3%)

Query: 197 ELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDIL-RGELTSYQVELLEQMENS 255
           ELR A++ AE AN++KS FLA MSHE+RTP   +LG++D+L    L   Q   +     S
Sbjct: 339 ELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLNEKQERYIRLAYGS 398

Query: 256 AELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGVHFYVQSNKN 315
            + LL I+NDILD+S+IE+G   +H   +DL   L +        A  KG+ F       
Sbjct: 399 TKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQKGLEFRYHIKGI 458

Query: 316 PTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTK-----DGVVFRVKDTGIGIE 370
              + + D  RL QI+ N++ NAIKFT  G V++ ++ T+       +   V+D+GIG+ 
Sbjct: 459 IPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRVEVRDSGIGVP 518

Query: 371 KNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFTLYIP 430
               E +F  F QAD+S TR +GGTGLGL I K LVELM G+I V S  G G+ F   I 
Sbjct: 519 PELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNSGEGSCFWFDIE 578

Query: 431 LQSRLKNIKP---STSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGL 487
           L      + P     + S      ++  IL+V+DT+ N+ V+   L +    V  A NGL
Sbjct: 579 LPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLAQAHCQVRQAANGL 638

Query: 488 QAVELLEKNHVFDLVLMDISMPIMDGIAATKILR---DKHIEIPIIALTAHTAGSDKQNC 544
           +AV L E     D +LMD  M  MDG  AT+ +R    +    PIIALTA     D++ C
Sbjct: 639 EAVTLAESWQP-DAILMDCQMAGMDGYEATRQIRIQEGQRRRTPIIALTAFVMRGDREKC 697

Query: 545 IDAGMNDIVLKPIRSKDIMEVVKRFL 570
           + AGM+D + KP+ ++ ++  + ++L
Sbjct: 698 LAAGMDDYLPKPVDAQTLIATIGKWL 723



 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIA 515
           IL+V+D    +     LL  LG  V  A +G +A++L  +   FDLVLMD  MP +DG A
Sbjct: 740 ILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEAD-FDLVLMDCRMPGLDGCA 798

Query: 516 ATKILRDKHIEIP--IIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFLNP 572
            T+  R +    P  IIALTA      +  C +AGMND + KP   ++++ +++R+L P
Sbjct: 799 TTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQELVTLLRRWLAP 857