Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  244 bits (624), Expect = 8e-69
 Identities = 164/421 (38%), Positives = 241/421 (57%), Gaps = 29/421 (6%)

Query: 171 RPLLERAISDIEHKEELQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAV 230
           R  LE  +S+  H   L++LV  RT EL  A+  A  AN +KS FLA MSHE+RTP+NA+
Sbjct: 419 RKRLEAEVSNYSH--HLEELVAERTEELARARDAANAANVAKSAFLANMSHEIRTPMNAI 476

Query: 231 LGLIDILR-GELTSYQVELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKK 289
           +GL  IL+ GE +  Q + L++++++A  LL IINDILDLS+IE+    L    ++L + 
Sbjct: 477 IGLTHILKKGEPSPQQQDRLDKIDDAASHLLSIINDILDLSKIEAERLVLEEQPVELGRI 536

Query: 290 LDQSLVYHRQIAQDKGVHFYVQSNKNPTLEYYT-DSARLTQILFNIVGNAIKFTKQGQVD 348
           +        + A+ K +   ++S  +P   Y   D  RLTQ + N   NA+KFT+ G V 
Sbjct: 537 VSHIFSMLAEGARKKDI--VLKSEVDPLPPYLLGDPTRLTQAILNYASNAVKFTEWGSVT 594

Query: 349 V---VLDYTKDGVV--FRVKDTGIGIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITK 403
           +   VL+ T   V   F V+DTGIGI       LF PF QAD S +R +GGTGLGL IT+
Sbjct: 595 LRIKVLELTPADVFLRFEVEDTGIGIAPEVQPLLFAPFQQADGSTSRRFGGTGLGLVITR 654

Query: 404 HLVELMGGTIQVESEFGIGTTFTLYIPLQSRLK-----------NIKPSTSSSQQIVNVK 452
            L ++MGG   V+S  G G+TF       +RLK             +P ++  + + + +
Sbjct: 655 RLAQIMGGDAGVDSRLGFGSTFW----FSARLKLGEARAALPEDGPRPDSAEGELLQHYR 710

Query: 453 NHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHV-FDLVLMDISMPIM 511
              IL+ ED   NQ V + LL   G  V IA +G +AV  LE+    + LVLMD+ MP M
Sbjct: 711 GTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYALVLMDMQMPGM 770

Query: 512 DGIAATKILR--DKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRF 569
           DG+ AT+ +R       +PII++TA+  G D++ C++AGMND V KP+  + +  ++ ++
Sbjct: 771 DGLEATRHIRRLPGMESLPIISMTANAFGEDRERCLEAGMNDFVPKPVNPEVLYAMLLKW 830

Query: 570 L 570
           L
Sbjct: 831 L 831