Pairwise Alignments

Query, 405 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (484), Expect = 4e-53
 Identities = 114/317 (35%), Positives = 177/317 (55%), Gaps = 8/317 (2%)

Query: 89  VGIMGIYDSPQAAYGTALI-SLCDNRPIPELIDQAIDNALESADRTGELPSLVLLHATPG 147
           + I+  YD PQ +YG A   S  D+  I E   QA+  AL +A+R GELP+ +    +PG
Sbjct: 79  LAILQFYD-PQGSYGVASKQSSIDS--IIEDSQQALTLALNAANRPGELPAFIWCSQSPG 135

Query: 148 IEEVLIEGIDNKFGSQVPIIGGSAADNFISQNWSIFTQEGATDKGIALQLMFPSQSVFGG 207
           +EE L+ GI    G+ VP+ GG+AADN +S +W +F  +     G  + ++FPS  +   
Sbjct: 136 LEEGLLAGIRQLVGNNVPVFGGTAADNDVSGHWCMFDGQQTITTGFIIAVLFPSTPINYF 195

Query: 208 FSAGYSPTEFSGVITKAKGRVIEEIDNESASGLYKEWIGDHSGIQITEQYLFEHVTRFPL 267
           FS+GY  T  + ++T A GR +  ++++ A+ +Y +W    +   +    +    T  PL
Sbjct: 196 FSSGYETTRHTAIVTSASGRKLHTLNHQPAASVYNQWRTMMALPTLANGPVLAQSTFNPL 255

Query: 268 GRVVGKEESCSTQYKLTHPVRRTENGGLEMFANVEVGEQVSLMTGSQNQLIERVTRVIQE 327
           GRV+   +   T   L+HP     +G +E+F+ V  GEQ++ M G+Q  LI+R   V   
Sbjct: 256 GRVILDNDEQMT--LLSHPAFIYGDGTMELFSEVYQGEQLTFMHGNQTLLIQRAQTVTHF 313

Query: 328 ASYKSYQ--DRALFGSLTIFCAGSMLRLGQDIHKVQQKIMEQLNGCAFICPFTFGEQGRF 385
           A+ + +   D     ++ IFCAG ML +  +  +V+Q +   L    FI  FTFGEQGRF
Sbjct: 314 ATQQLHDLYDSKPLAAIVIFCAGCMLAIKNETSQVRQGVENALGNVPFIGGFTFGEQGRF 373

Query: 386 INGENAHGNLMISSVVF 402
            +G N HGNLMIS+++F
Sbjct: 374 ADGVNRHGNLMISAIIF 390