Pairwise Alignments

Query, 477 a.a., cytochrome-c oxidase, cbb3-type subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., cbb3-type cytochrome c oxidase subunit I from Rhodopseudomonas palustris CGA009

 Score = 87.8 bits (216), Expect = 7e-22
 Identities = 104/451 (23%), Positives = 187/451 (41%), Gaps = 33/451 (7%)

Query: 33  MAVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATSYYVVQRTCQTR 92
           ++ GVL     V P  N  +  L ++ +R +HTNA+I  +        +YY+V    +  
Sbjct: 24  VSFGVLAGTIYVLP--NTLSELLPFNIVRMIHTNALI-VWLLMGFMGCAYYLVPEEAENE 80

Query: 93  LFGGPLVPFTFWGWQAIIVSAAITLPLGYTSGKEYAELEWPIDIAIAAVWVAYAVVFFGT 152
           LF   L    FW +     +A +     Y  G+E+ E  + I I I  V + +      T
Sbjct: 81  LFSPLLAKLQFWLFFGAAGAAVVGYLFHYHEGREFLEQPFVIKIGIVVVCLIFLFNITMT 140

Query: 153 LVK-RKTSHIYVANWFFGAFIITVAVLHIVNSMALPVSMGKSYSIYAGAVDAMVQWWYGH 211
           ++K RKT+   +    FG + + +  L    +   P ++         A+D M  W+  H
Sbjct: 141 VLKGRKTTITNIL--LFGLWGVAIFFLFAFYN---PANL---------ALDKMYWWYVVH 186

Query: 212 ---NAVGFLLTAGFLGMMYYFVPKQAERPVYSYRLSIVHFWALISLYIWAGPHHLHYTAL 268
                V  L+ A  L  +   +    +R V    L ++   AL S  +  G HH ++   
Sbjct: 187 LWVEGVWELIMASVLAFLMIKL-NGIDREVVEKWLYVIIGLALFSGILGTG-HHYYWIGA 244

Query: 269 PDWTQSLGMVMSLVLFAPSWGGMINGIMTL--SGAWHKLRYDPILRFLIVSLSFYGMSTF 326
           P + Q +G + S +  AP +  ++  +     +G  H+ R   +       ++F+G   +
Sbjct: 245 PGYWQWIGSLFSTLEVAPFFTMVVFTVQMTWKAGRKHENRAALLWSVGCSVMAFFGAGVW 304

Query: 327 EGPMMSIKTVNALSHYTDWTIGHVHSGALGWVAMVSIGSVYHLIPRLFGQERMYSVSLIN 386
            G + ++ +VN  +H T  T  H H    G   M+++  + + IP+L G+   Y+ +L  
Sbjct: 305 -GFLHTLSSVNYYTHGTQVTAAHGHLAFFGAYVMLNLAMMTYAIPQLCGR-APYNQALSI 362

Query: 387 AHFWLATIGTVLYIVAMWISGVMQGLMWRAVNSDGTLTYSFVESVQASYPFYTVRFIGGF 446
           A FWL      +   A+  +G++Q      V+    L   ++E       FY VR   G 
Sbjct: 363 ASFWLMCTAMSVMTFALTFAGIIQ------VHLQRVLGQGYMEVQDQIALFYWVRLGSGV 416

Query: 447 IFLSGMFLMAYNAYKTISAPKNSLKAIVQPA 477
             L    +  +         + +L   +QPA
Sbjct: 417 AVLISALMFVWAILVAGRTKQATLTGALQPA 447



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 21/101 (20%)

Query: 149 FFGTLVKRKTSHIYVANWFFGAFIITVAVLHIVNSMALPVSMGKSYSIYAGAVDAMVQWW 208
           F+G L       +++A   FG    T+ VL    S  LP ++ +         +A++ W 
Sbjct: 13  FYGALT------LFLAQVSFGVLAGTIYVLPNTLSELLPFNIVRMIH-----TNALIVW- 60

Query: 209 YGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYRLSIVHFW 249
                    L  GF+G  YY VP++AE  ++S  L+ + FW
Sbjct: 61  ---------LLMGFMGCAYYLVPEEAENELFSPLLAKLQFW 92