Pairwise Alignments

Query, 477 a.a., cytochrome-c oxidase, cbb3-type subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., cytochrome-c oxidase (RefSeq) from Shewanella loihica PV-4

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 20/259 (7%)

Query: 161 IYVANWFFGAFIITVAVLHIVNSMALPVS---MGKSYSIYAGAVDAM----VQWWYGHNA 213
           ++V  W   AF++   +  +  ++ + ++    G S+   AG  D +    + W++GH  
Sbjct: 207 LFVWTWLITAFLLIAVMPVLAGTVTMVLTDKFFGTSFFDAAGGGDPVMFQHIFWFFGHPE 266

Query: 214 VGFLLTAGFLGMMYYFVPKQAERPVYSYRLSIVHFWA---LISLYIWAGPHHLHYTALPD 270
           V  ++   F G++   VP  + + ++ Y  S+V+  A   ++S  +WA  HH+  T +P 
Sbjct: 267 VYIMILPSF-GIISAIVPAFSRKKLFGYS-SMVYATASIAILSFLVWA--HHMFTTGMPV 322

Query: 271 WTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWH-KLRYDPILRFLIVSLSFYGMSTFEGP 329
           + +   M  ++++  P+   + N + TL   W   L ++  + F +  +  + +  F G 
Sbjct: 323 FAELFFMYCTMLIAVPTGVKVFNWVATL---WRGSLTFETPMLFALAFIILFTIGGFSGL 379

Query: 330 MMSIKTVNALSHYTDWTIGHVHSGALGWVAMVSIGSVYHLIPRLFGQERMYSVSLINAHF 389
           M++I  V+   H T + + H H   +       + + Y+ +P+  G   MYS  L   HF
Sbjct: 380 MLAITPVDFQYHDTYFVVAHFHYVLVSGAIFSIMAAAYYWLPKWTG--HMYSEKLGKLHF 437

Query: 390 WLATIGTVLYIVAMWISGV 408
           W + I   +    M   G+
Sbjct: 438 WCSVISVNVLFFPMHFLGL 456