Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., cytochrome c oxidase, cbb3-type, subunit III from Pseudomonas stutzeri RCH2

 Score =  285 bits (730), Expect = 8e-82
 Identities = 148/325 (45%), Positives = 197/325 (60%), Gaps = 29/325 (8%)

Query: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60
           MT+FWS ++ ++++GT+     LL+   K +        +GH YDGI E +NPLP+WW  
Sbjct: 1   MTSFWSWYVTLLSLGTIAALVWLLLATRKGQRPDSTEETVGHSYDGIEEYDNPLPRWWFM 60

Query: 61  LFIGTFIFAAIYLTLYPGLGSFKGILGWQSSDQTVRSLEESRASIAAAQQNKQLVQYSKE 120
           LF+GT IFA  YL LYPGLG++KGIL       T                  Q+ ++ +E
Sbjct: 61  LFVGTVIFALGYLVLYPGLGNWKGILPGYEDGWT------------------QVKEWQRE 102

Query: 121 LDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDARGQK 180
           +D A+  YG  + + A          + ++A D  ALK+G RLF  NCS CHGSDA+G  
Sbjct: 103 MDKADEQYGPLYAKYAAMP-------VEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAY 155

Query: 181 GFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDILGEQGVKEVVSYTLSLSGRSVN- 239
           GFPNLTDD WL+GGEP+ I TTI HGR   MPAWKD+ GE+G++ V  Y  SLSGR    
Sbjct: 156 GFPNLTDDDWLWGGEPETIKTTILHGRQAAMPAWKDVFGEEGIRNVAGYVRSLSGRDTPE 215

Query: 240 --AKEAEAGKARFAV-CSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGRSG 296
             + + E G+  FA  C  CHG + KG  A GAPNLTDN WL+G S A++ +T+  GR+G
Sbjct: 216 GISVDIEQGQKIFAANCVVCHGPEAKGVAAMGAPNLTDNVWLYGSSFAQIQQTLRYGRNG 275

Query: 297 VMPAWINTLGEEKIQLVAAYVWSLS 321
            MPA    LG +K+ L+AAYV+SLS
Sbjct: 276 RMPAQEAILGNDKVHLLAAYVYSLS 300



 Score = 80.9 bits (198), Expect = 4e-20
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 6/89 (6%)

Query: 240 AKEAEA----GKARFAVCSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGRS 295
           AK+ +A    G+   + CS CHG+D KG  A+G PNLTD+DWL+G     +  T+++GR 
Sbjct: 126 AKDPQALKMGGRLFASNCSVCHGSDAKG--AYGFPNLTDDDWLWGGEPETIKTTILHGRQ 183

Query: 296 GVMPAWINTLGEEKIQLVAAYVWSLSNSE 324
             MPAW +  GEE I+ VA YV SLS  +
Sbjct: 184 AAMPAWKDVFGEEGIRNVAGYVRSLSGRD 212