Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., cytochrome c oxidase, cbb3-type, subunit III (RefSeq) from Shewanella loihica PV-4

 Score =  333 bits (855), Expect = 3e-96
 Identities = 170/328 (51%), Positives = 218/328 (66%), Gaps = 13/328 (3%)

Query: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60
           M++FWS+WI V+T+  + GC ILL    K+  GVEEG  MGH +DGI E+NNPLPKWW+Y
Sbjct: 2   MSSFWSIWITVLTIVVIAGCFILLFVVSKNTTGVEEGKSMGHSFDGIEEINNPLPKWWSY 61

Query: 61  LFIGTFIFAAIYLTLYPGLGSFKGILGWQSSDQTVRS----LEESRASIAAAQQNKQLVQ 116
           +F  T IF  +YL  YPGLG++KG LGW SS+Q++ +     E+S A++  A    + VQ
Sbjct: 62  MFYITIIFGVVYLAAYPGLGNYKGFLGWSSSNQSIGTEKGIKEDSAAAVELAANEHRWVQ 121

Query: 117 YSKELDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDA 176
           Y +E++ A A Y   F   AY    T L E   +  + +ALKVG RLFLQNC+QCHGSDA
Sbjct: 122 YDQEVEKANAKYSPIF--AAYL--ATPLEE---LVKNEEALKVGGRLFLQNCAQCHGSDA 174

Query: 177 RGQKGFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI-LGEQGVKEVVSYTLSLSG 235
           RG KGFPNLTD  WLYGG+   I TTI +GR G MP    + + +  +K +  Y + LSG
Sbjct: 175 RGSKGFPNLTDGDWLYGGDLATIKTTIMNGRNGMMPPKGGLPIEDSELKGLAEYVVKLSG 234

Query: 236 RSVNAKEAEAGKARFAV-CSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGR 294
           R  +   A  G+A F   C ACHG DG GN   GAPNLTDN WL+G SR  + E++ NGR
Sbjct: 235 RDHDEALAAQGQASFMKGCFACHGMDGTGNKFMGAPNLTDNTWLYGGSRGVIQESIKNGR 294

Query: 295 SGVMPAWINTLGEEKIQLVAAYVWSLSN 322
           SGVMPAW + LGEEK+ ++AAYV+SLSN
Sbjct: 295 SGVMPAWKDVLGEEKVHVIAAYVYSLSN 322



 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 160 GQRLFLQNCSQCHGSDARGQK--GFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI 217
           GQ  F++ C  CHG D  G K  G PNLTD+ WLYGG    I  +I++GR G MPAWKD+
Sbjct: 245 GQASFMKGCFACHGMDGTGNKFMGAPNLTDNTWLYGGSRGVIQESIKNGRSGVMPAWKDV 304

Query: 218 LGEQGVKEVVSYTLSLSGR 236
           LGE+ V  + +Y  SLS +
Sbjct: 305 LGEEKVHVIAAYVYSLSNK 323