Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., cytochrome c oxidase, cbb3-type, subunit III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  320 bits (820), Expect = 3e-92
 Identities = 162/328 (49%), Positives = 217/328 (66%), Gaps = 13/328 (3%)

Query: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60
           M++FWS+WI V+++  + GC +LL  C K+   V+EG  MGH +DGI ELNNPLPKWW+Y
Sbjct: 1   MSSFWSIWISVLSLIVIAGCFLLLRVCSKNTTDVKEGESMGHSFDGIEELNNPLPKWWSY 60

Query: 61  LFIGTFIFAAIYLTLYPGLGSFKGILGWQSSDQTVRSLE----ESRASIAAAQQNKQLVQ 116
           +F  T +F  +YL L+PGLG++KG+L W SS+Q++ + +    +S A++  A +  Q VQ
Sbjct: 61  MFYITIVFGLVYLALFPGLGNYKGLLNWTSSNQSIGTGQGIKADSAAAVELAAKEGQYVQ 120

Query: 117 YSKELDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDA 176
           Y +E+  A   YG  F   AY    T L E   +  + +ALKVG RLFLQNC+QCHGSDA
Sbjct: 121 YDQEVKHANEKYGPIF--AAYL--ATPLEE---LVKNQEALKVGGRLFLQNCAQCHGSDA 173

Query: 177 RGQKGFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI-LGEQGVKEVVSYTLSLSG 235
           RG KGFPNLTD  WLYGG+   I TTI  GR G MP    + + +  +  +  Y + LSG
Sbjct: 174 RGSKGFPNLTDSDWLYGGDLATIKTTIMGGRHGMMPPKGGLPIDDSEIAGLAEYVVKLSG 233

Query: 236 RSVNAKEAEAGKARFAV-CSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGR 294
           R  + K A  G+  F   C ACHG D KGN   GAPNLTD+ W++G SR  + ET+ +GR
Sbjct: 234 REHDEKLAAQGQGSFMKGCFACHGMDAKGNKLMGAPNLTDDVWVYGGSRGVIEETIKHGR 293

Query: 295 SGVMPAWINTLGEEKIQLVAAYVWSLSN 322
           +GVMPAW + LGEEK+ ++AAYV+SLSN
Sbjct: 294 TGVMPAWKDVLGEEKVHVIAAYVYSLSN 321



 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 160 GQRLFLQNCSQCHGSDARGQK--GFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI 217
           GQ  F++ C  CHG DA+G K  G PNLTDD W+YGG    I  TI+HGR G MPAWKD+
Sbjct: 244 GQGSFMKGCFACHGMDAKGNKLMGAPNLTDDVWVYGGSRGVIEETIKHGRTGVMPAWKDV 303

Query: 218 LGEQGVKEVVSYTLSLSGR 236
           LGE+ V  + +Y  SLS +
Sbjct: 304 LGEEKVHVIAAYVYSLSNK 322