Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., cytochrome c oxidase, cbb3-type, subunit III (RefSeq) from Shewanella sp. ANA-3

 Score =  322 bits (824), Expect = 1e-92
 Identities = 163/328 (49%), Positives = 217/328 (66%), Gaps = 13/328 (3%)

Query: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60
           M++FWS+WI V+++  + GC +LL  C K+   V+EG  MGH +DGI ELNNPLPKWW+Y
Sbjct: 1   MSSFWSIWISVLSLTVIAGCFLLLRVCSKNTTDVKEGESMGHSFDGIEELNNPLPKWWSY 60

Query: 61  LFIGTFIFAAIYLTLYPGLGSFKGILGWQSSDQTVRSLE----ESRASIAAAQQNKQLVQ 116
           +F  T +F  +YL L+PGLG++KG+L W SS+Q++ + +    +S A+I  A +    VQ
Sbjct: 61  MFYITIVFGLVYLALFPGLGNYKGLLNWTSSNQSIGTEKGIKADSAAAIELAAKEGMYVQ 120

Query: 117 YSKELDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDA 176
           Y +E+  A   YG  F   AY    T L E   +  + +ALKVG RLFLQNC+QCHGSDA
Sbjct: 121 YDQEVKHANEKYGPIF--AAYL--ATPLEE---LVKNQEALKVGGRLFLQNCAQCHGSDA 173

Query: 177 RGQKGFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI-LGEQGVKEVVSYTLSLSG 235
           RG KGFPNLTD  WLYGG+   I TTI +GR G MP    + + +  +  +  Y + LSG
Sbjct: 174 RGSKGFPNLTDSDWLYGGDLATIKTTIMNGRHGMMPPKGGLPIDDSEIAGLAEYVVKLSG 233

Query: 236 RSVNAKEAEAGKARFAV-CSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGR 294
           R  + K A  G+  F   C ACHG D KGN   GAPNLTD+ WL+G SR  + ET+ +GR
Sbjct: 234 REHDEKLAAQGQGSFMKGCFACHGMDAKGNKLMGAPNLTDDVWLYGGSRGMIEETIKHGR 293

Query: 295 SGVMPAWINTLGEEKIQLVAAYVWSLSN 322
           +GVMPAW + LGEEK+ ++AAYV+SLSN
Sbjct: 294 AGVMPAWKDVLGEEKVHVIAAYVYSLSN 321



 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 160 GQRLFLQNCSQCHGSDARGQK--GFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDI 217
           GQ  F++ C  CHG DA+G K  G PNLTDD WLYGG    I  TI+HGR G MPAWKD+
Sbjct: 244 GQGSFMKGCFACHGMDAKGNKLMGAPNLTDDVWLYGGSRGMIEETIKHGRAGVMPAWKDV 303

Query: 218 LGEQGVKEVVSYTLSLSGR 236
           LGE+ V  + +Y  SLS +
Sbjct: 304 LGEEKVHVIAAYVYSLSNK 322