Pairwise Alignments

Query, 315 a.a., universal stress protein UspE from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 92.8 bits (229), Expect = 9e-24
 Identities = 74/314 (23%), Positives = 141/314 (44%), Gaps = 23/314 (7%)

Query: 1   MSIYSKILVVADINHDEQPALARAMQLAQKSTSVSHITFFLSIYDFSYDMTSMLSLEERD 60
           M  Y ++LVV D +     A++RA+ LA K+    H    + + + S+ +  ++   E D
Sbjct: 1   MDSYQRLLVVVDEHDFSLKAVSRAVYLASKT----HAAIIVMMLEHSHFVNRLVDTFEAD 56

Query: 61  AMRKGVIHQREQWMRSIAEPYLDKSVQFDIKV-----VWHNRPYEAIIGEIFAGEHDILI 115
                     ++   S    ++ ++ Q  + +       H+        + F  + D +I
Sbjct: 57  GNEGQTQPLTKERKLSCLNAFISQAAQSGLSISKASIACHSSDDVLQFCDDF--KVDAVI 114

Query: 116 KATRKHDMLESVIFTPTDWHLMRKCPTPVLLVKNADWPENANIIASVHVGSELDTHIDLN 175
            A  +H +   +   P D  L+R+   PV++VK+  W    +I++ V   ++  TH  LN
Sbjct: 115 LAASRHKLWNWLTIKPLDVRLIRESSRPVVVVKDHLWQPGGHILSLVEPCADDVTHRALN 174

Query: 176 DRMVEQLLNLSKRLGASPYLVNAYPVTPANITIELPEFDPTTYTDAVRGHHLTAMKALRQ 235
           D +++   + S+ L    +L++ Y     +I+     F           +HL  M +   
Sbjct: 175 DAVLQTSEHFSQLLAGDCHLIDCYYGETPSIS-----FHQALAPANDENYHLQKMSSYSS 229

Query: 236 KHGLSEEQTLVQ-------QGLPEDVIPEAAKQLNAAMVILGTTGRTGLSAVFIGNTAEH 288
           ++ L  +   V        + LPED I   AK++++ +VI+G TG   + +   G+  E 
Sbjct: 230 RYHLQPKGAAVSNHHLHLAKSLPEDAIESLAKEVDSELVIVGDTGNGSMFSNMCGHVGEQ 289

Query: 289 VIDKINCDVLALKP 302
           VID+I CD+L +KP
Sbjct: 290 VIDRIQCDLLVVKP 303