Pairwise Alignments

Query, 310 a.a., tRNA 2-thiocytidine(32) synthetase TtcA from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  396 bits (1018), Expect = e-115
 Identities = 192/301 (63%), Positives = 236/301 (78%), Gaps = 6/301 (1%)

Query: 6   QELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQK 65
           +EL+K Q    NKLQKR+RR  G AIAD+NMIEDGDR+M CLSGGKDS+ MLDIL++LQ+
Sbjct: 3   EELSKKQTTRLNKLQKRLRREVGSAIADYNMIEDGDRVMCCLSGGKDSYAMLDILLNLQQ 62

Query: 66  SAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYAIVQDKVPEGKTTCAL 125
            AP+ FE++AVNLDQKQPGFPE VLP YL+SL V Y I+E+DTY+IV++K+PEGKTTC+L
Sbjct: 63  RAPVQFEIIAVNLDQKQPGFPEDVLPAYLDSLNVPYHILEKDTYSIVKEKIPEGKTTCSL 122

Query: 126 CSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGEHVV 185
           CSRLRRG LY  A+ +GATKIALGHHRDDI+ETLFLNMF+GGKMK MPPKL+SD+G +VV
Sbjct: 123 CSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLNMFFGGKMKAMPPKLLSDDGANVV 182

Query: 186 IRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFR 245
           IRPLAYCREKD+ +Y++++ +PIIPCNLCGSQ NL+RQAVK MLN W+++FPGRIET+F 
Sbjct: 183 IRPLAYCREKDLEEYAELKKFPIIPCNLCGSQENLKRQAVKDMLNQWNRQFPGRIETIFT 242

Query: 246 AMQNVVPSHLADFSLFDFKSIDKNSGVINGGDI------GFDKEEIAPQVVEDEDLVMEF 299
           AMQN  PS   D   FDF S+ ++      GD+       FD  +IA     D D     
Sbjct: 243 AMQNTAPSQGVDREQFDFVSLKRDPDAPMKGDVAEANLPAFDFLDIANSGHIDLDAAKRI 302

Query: 300 D 300
           D
Sbjct: 303 D 303