Pairwise Alignments

Query, 310 a.a., tRNA 2-thiocytidine(32) synthetase TtcA from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  124 bits (310), Expect = 3e-33
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 7/242 (2%)

Query: 18  KLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQKSAPISFELVAVN 77
           K  +RI R   + +  + +IE+GD+I++ LSGGKDS  ++++L    +     F ++AV+
Sbjct: 9   KTIRRIERRFNKGVVQYRLIEEGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVIAVH 68

Query: 78  LDQKQPGFPEHV--LPEYLESLGVEYKIVEEDTYAIVQDKVPEGKTTCALCSRLRRGILY 135
           +      +      L  Y +S GV + +  E ++    D     K+ C LCS  RR  L+
Sbjct: 69  VVMNNIPYQSDTEYLKAYCDSFGVPF-VQYETSFDPATDT---RKSPCFLCSWNRRKALF 124

Query: 136 RTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGEHVVIRPLAYCREK 195
             AKE G  KIALGHH DDILETL +N+ Y G    MPP+LV    +  +IRP+    E 
Sbjct: 125 TVAKEQGCNKIALGHHMDDILETLLMNITYQGAFSTMPPRLVMKKFDMTIIRPMCMVHEA 184

Query: 196 DIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHL 255
           D+I+ + +  Y     N C  +    R  +K +L   +   P    +++ +M NV    L
Sbjct: 185 DLIELAALHDYRKQVKN-CPYESQSSRSDMKGILRQLEAMNPEARYSLWGSMTNVQEELL 243

Query: 256 AD 257
            D
Sbjct: 244 PD 245