Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

 Score =  197 bits (500), Expect = 3e-55
 Identities = 105/278 (37%), Positives = 163/278 (58%), Gaps = 17/278 (6%)

Query: 15  LIVG----WLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTRLL 58
           L++G    WL +F ++P  +++  SF   D A              ++      NYT L 
Sbjct: 20  LVIGVPFLWLFMFFMLPFFIVLKISFAEADVAIPPYTEIYSYVDQKVQLLLNLGNYTMLG 79

Query: 59  -DPLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIR 117
            D LY    L S  MA+ +T++CL+IGYP AY +A   ++ +  ++ LI++P WT  LIR
Sbjct: 80  GDELYIAAYLGSLKMALFSTILCLLIGYPMAYAIASARKEIQTVLVLLIMMPTWTAILIR 139

Query: 118 TYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKL 177
            Y    +L   G+LN  LMS+G I+ PL+I+ T  AV IG+VY  LPFMILPLY+ + K 
Sbjct: 140 VYAWMGILSNNGLLNGFLMSMGWINEPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKH 199

Query: 178 DGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLI 237
           D + +EAA DLG++ F +  ++ +PL+  GII GC+LV +P +G F I +LLGG + L+I
Sbjct: 200 DNSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMI 259

Query: 238 GNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYYRA 275
           G V+  +  N RDWP  +A ++ +   + + +  + R+
Sbjct: 260 GKVLWQEFFNNRDWPVASALAVVMLAILIVPIILFNRS 297