Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  204 bits (519), Expect = 2e-57
 Identities = 108/282 (38%), Positives = 170/282 (60%), Gaps = 18/282 (6%)

Query: 7   NLQNAIVTLIVGWLVLFVLIPNLMIIGTSF---------------LTRDEANLIKFAFTF 51
           N +  ++ +   WL+LF ++P  +++  SF                T+D    ++     
Sbjct: 36  NGRRLVILVPYVWLLLFFVLPFAIVLKISFAEFRVGVPPYTALIDFTQDA--YLRLTLAL 93

Query: 52  ENYTRLLDP-LYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPF 110
            NY  +LD  +Y    L+S  +A ++T++ L+IGYP AY +A+ P+  R  +LFL+I+PF
Sbjct: 94  SNYKYMLDDEMYVIAYLNSLRIAGISTVLALLIGYPMAYGIARAPKGPRTILLFLVILPF 153

Query: 111 WTNSLIRTYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPL 170
           WT+ LIR Y    +L   G+LN  L+  G+ID PL IM TE AV IG+VY  LPFM+LPL
Sbjct: 154 WTSFLIRVYAWMGILKGNGLLNTFLIWTGVIDQPLTIMGTEWAVFIGIVYSYLPFMVLPL 213

Query: 171 YSAIEKLDGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLG 230
           Y+ +EKLD + +EAA DLG   ++  + + LPL++PGII G +LV +P++G F I +LLG
Sbjct: 214 YATLEKLDPSLLEAAHDLGCRPWKAFLTITLPLSVPGIIAGSMLVFIPSVGEFVIPELLG 273

Query: 231 GAKNLLIGNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAY 272
           GA   +IG V+ ++    RDWP  +A ++A+ L + + +  +
Sbjct: 274 GADTFMIGRVLWNEFFLNRDWPVASAVAVAMLLMLVVPIMIF 315