Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (487), Expect = 1e-53
 Identities = 99/269 (36%), Positives = 156/269 (57%), Gaps = 13/269 (4%)

Query: 19  WLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTRLL-DPLYGKV 65
           WL++F  +P  +++  S  T   A              ++      NY  +  D LY   
Sbjct: 23  WLLMFFALPFAIVLKISLSTPAVAIPPYEALYQYADESLQIMLNLGNYILIFEDHLYINA 82

Query: 66  MLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVL 125
            L S  MA V T+ CL+IGYP AY +A+ P++ +  ++ L+++P WT+ LIR Y    +L
Sbjct: 83  YLGSLKMACVTTIGCLLIGYPMAYAIARAPKQHQTVLILLVMLPSWTSFLIRVYAWMGIL 142

Query: 126 GTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAA 185
              G++N  LM LG+I  P++++ T  AV IG++Y  LPFMILPLY+ + +LDG+ +EAA
Sbjct: 143 SNNGVINNLLMWLGVISEPIQMLNTNFAVYIGIIYTYLPFMILPLYANLSQLDGSLLEAA 202

Query: 186 RDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQV 245
            DLG+    T  +V LPL+  G+I G +LV +P +G F I +LLGG  +L+IG V+  + 
Sbjct: 203 ADLGSRSLNTFWKVTLPLSKGGVIAGSMLVFIPVVGEFVIPELLGGPDSLMIGKVLWQEF 262

Query: 246 LNARDWPFGAATSIALTLAMAIMLYAYYR 274
            N RDWP  ++ +I +   + I +  ++R
Sbjct: 263 FNNRDWPVASSLAIVMLALLIIPITLFHR 291