Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  292 bits (748), Expect = 6e-84
 Identities = 137/276 (49%), Positives = 198/276 (71%)

Query: 2   MSKKLNLQNAIVTLIVGWLVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLLDPL 61
           M+++   + A + ++  WL LF L+PNL ++  +FL R E++ +   FT++NY RL DP+
Sbjct: 1   MTQRRPFRTASIAVVWLWLGLFALLPNLGLLLVTFLERGESDFVSLVFTWDNYARLADPV 60

Query: 62  YGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGL 121
           + +++  S ++A  +TL+CL+IGYPFAY VA      RP++L L+++PFWTNSLIRTY L
Sbjct: 61  FIRILGESLWLAAASTLVCLLIGYPFAYAVATARRGLRPWLLLLVVIPFWTNSLIRTYAL 120

Query: 122 KIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTY 181
            I+L +QGI +  LM+LGL+  P+  M+ E AV  GL Y LLPFMILPLY++IEKLD   
Sbjct: 121 IIILKSQGIASNVLMALGLVSEPVSFMYGEFAVFTGLTYTLLPFMILPLYASIEKLDKRL 180

Query: 182 IEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVI 241
           ++AA+DLGA+  +    V LPLT+PGI+ GC+LV LP+LG FYI ++LGGAK++LIGN I
Sbjct: 181 LDAAKDLGASSLRAFWHVTLPLTLPGIVAGCMLVFLPSLGCFYIPEILGGAKSMLIGNFI 240

Query: 242 KSQVLNARDWPFGAATSIALTLAMAIMLYAYYRAGK 277
           K+Q L ARDWP GAA S  LT+ + +M+  Y+ + +
Sbjct: 241 KNQFLVARDWPLGAAASTILTVLLVLMIIGYWLSSR 276