Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  210 bits (535), Expect = 3e-59
 Identities = 110/270 (40%), Positives = 165/270 (61%), Gaps = 15/270 (5%)

Query: 19  WLVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFE-------------NYTRLLD-PLYGK 64
           WL+LF  +P  ++   S  T   A +  +  TF+             NY  LLD PLY  
Sbjct: 23  WLLLFFALPFAIVFKISLSTAAIA-IPPYEATFQYADDVLNIFLHLGNYLMLLDDPLYYT 81

Query: 65  VMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIV 124
             L S  MA+V+T+ CL+IGYP AY +A+ P +W+  +L L+++P WT+ LIR Y    +
Sbjct: 82  AYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSFLIRVYAWMGI 141

Query: 125 LGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEA 184
           L   GI+N +LM LG+I  PL+I+ T  AV IG++Y  LPFMILPLY+ + KLD + IEA
Sbjct: 142 LSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEA 201

Query: 185 ARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQ 244
           A DLG+++  T  ++  PL+  G+I G +LV +PA+G F I +LLGG  +L+IG V+  +
Sbjct: 202 ASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQE 261

Query: 245 VLNARDWPFGAATSIALTLAMAIMLYAYYR 274
             N RDWP  ++ +I + + + I +  ++R
Sbjct: 262 FFNNRDWPVASSLAIVMLVLLIIPITLFHR 291