Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ABC-type spermidine/putrescine transport system, permease component II from Caulobacter crescentus NA1000

 Score =  210 bits (534), Expect = 4e-59
 Identities = 113/258 (43%), Positives = 158/258 (61%), Gaps = 15/258 (5%)

Query: 19  WLVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLLDPLYGKVMLHSFYMAIVATL 78
           WLVLF L P  ++   SF        I  + TF NY R ++PLY K+ L S ++A + T 
Sbjct: 26  WLVLFFLAPMAIVWAYSFGHNVGLTEIAISGTFHNYARAIEPLYLKIFLKSVWVAGLTTG 85

Query: 79  ICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQGILNQAL--- 135
           +CLVIG+P A  +    +K + ++L LI++PFWTN LIRTY L  VL T+G +NQ L   
Sbjct: 86  LCLVIGFPVALAITFASDKAKAWLLLLIMLPFWTNLLIRTYALIAVLRTEGYVNQGLEWF 145

Query: 136 --------MSLGLIDA----PLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIE 183
                     +GL       PL ++    AV++GLVY+ LPFM+LPLYSA+++LD + +E
Sbjct: 146 WKGGSGLATLIGLQPLGDFQPLELLHNNFAVILGLVYVHLPFMVLPLYSALDRLDKSLLE 205

Query: 184 AARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKS 243
           A+ DLGA   +TL +V++PL +PGI  G L+  +PALG +   DLLGG  + +I N+I+ 
Sbjct: 206 ASLDLGAGHLRTLFKVVVPLAIPGIASGVLITFIPALGAYLTPDLLGGPDSQMIANIIER 265

Query: 244 QVLNARDWPFGAATSIAL 261
           Q   A DWPFGAA S  L
Sbjct: 266 QFKRANDWPFGAALSFLL 283