Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella sp. ANA-3

 Score =  203 bits (517), Expect = 3e-57
 Identities = 107/270 (39%), Positives = 163/270 (60%), Gaps = 15/270 (5%)

Query: 19  WLVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFE-------------NYTRLLDP-LYGK 64
           WL+LF  +P  +++  SF T    ++  +  TF+             NY  LLD  LY  
Sbjct: 23  WLLLFFALPFAIVLKISFSTA-AISIPPYEATFQYADDVLNIFLHLGNYLMLLDDSLYYT 81

Query: 65  VMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIV 124
             L S  MA+++T+ CL+IGYP AY +A+ P + +  +L L+++P WT+ LIR Y    +
Sbjct: 82  AYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLLLLVMLPSWTSFLIRVYAWMGI 141

Query: 125 LGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEA 184
           L   GI+N  LM LG+I  PL+I+ T  AV IG++Y  LPFMILPLY+ + KLD + IEA
Sbjct: 142 LSNTGIINNTLMWLGIISDPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEA 201

Query: 185 ARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQ 244
           A DLG+++  T  ++  PL+  G+I G +LV +PA+G F I +LLGG  +L+IG V+  +
Sbjct: 202 ASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQE 261

Query: 245 VLNARDWPFGAATSIALTLAMAIMLYAYYR 274
             N RDWP  ++ +I +   + I +  ++R
Sbjct: 262 FFNNRDWPVASSLAIVMLALLIIPITLFHR 291