Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., polyamine ABC transporter permease from Pseudomonas fluorescens FW300-N2C3

 Score =  147 bits (372), Expect = 2e-40
 Identities = 81/260 (31%), Positives = 150/260 (57%), Gaps = 5/260 (1%)

Query: 1   MGRSIRFSFM---SLVYLFLYLPIIVLIANSFNENKFGI-KWGGFTTKWYHALMNNDSLM 56
           M R +RF       L+ LFL LPI+ ++  SF  +++ +    G+T KWY    +N   M
Sbjct: 8   MSRRMRFGLYFTTGLIALFLLLPIVFIVLLSFGSSQWLVFPPPGWTLKWYGQFFSNPDWM 67

Query: 57  QAAWHSINVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLA 116
            AA  S+ VAV +   A  +G  TA AL R +F G++++ G+  + M+ P +++A+++ A
Sbjct: 68  NAALTSLKVAVLTTVCAVALGLPTAFALVRGRFPGREMLYGLFTLPMIVPLVIIAVAVYA 127

Query: 117 LFLVMGAKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKII 176
           LFL +G     F  +++H+   LPF ++++   L  FD  + +AA   GA     + K+ 
Sbjct: 128 LFLKLGYTGTMFAFVVSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAVFKVT 187

Query: 177 LPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVM 236
            P  +P + AG L +F +S D+V++S  +  PT + LP+K+++ ++  ++P +   +T++
Sbjct: 188 FPAIRPGMVAGALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTLRQDLTPVIAVASTLL 247

Query: 237 LVVS-LVLVVASQLLAREKV 255
           + +S LV+V+A+ L  R ++
Sbjct: 248 IGLSVLVMVIAAALRRRNEI 267