Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., putrescine ABC transporter, permease component (from data) from Pseudomonas fluorescens FW300-N2E3

 Score =  188 bits (478), Expect = 1e-52
 Identities = 97/246 (39%), Positives = 159/246 (64%), Gaps = 10/246 (4%)

Query: 7   FSFMSLVY--LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSIN 64
           FS M LV   LF+Y+P+++L+  SFN +K    WGG++ KWY  L++N  LM +   S+ 
Sbjct: 6   FSRMMLVLGLLFIYMPMLILVIYSFNASKLVTVWGGWSVKWYVGLLDNTQLMGSVVRSLE 65

Query: 65  VAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGA 123
           +A +++ AA  +G+L A  L R  +FKG+ +  G++   ++ P+++  +SLL LF+ M  
Sbjct: 66  IACYTSIAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLFVAMAQ 125

Query: 124 KLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIIL 177
            +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA    +   I +
Sbjct: 126 MIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPLKVFFLITI 185

Query: 178 PLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT-VM 236
           P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A+ ++
Sbjct: 186 PMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLIL 245

Query: 237 LVVSLV 242
           L VS+V
Sbjct: 246 LAVSIV 251