Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  193 bits (490), Expect = 4e-54
 Identities = 97/246 (39%), Positives = 158/246 (64%), Gaps = 10/246 (4%)

Query: 6   RFSFMSLVY--LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSI 63
           RFS + LV   LF+Y P+++L+  SFN ++    WGG++ KWY  L++N  LM +   S+
Sbjct: 5   RFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSL 64

Query: 64  NVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMG 122
            +A ++A AA  +G++ A  L R  +FKG+    G++   ++ P+++  +SLL LF+ M 
Sbjct: 65  EIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMA 124

Query: 123 AKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKII 176
             +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +   I 
Sbjct: 125 QMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLIT 184

Query: 177 LPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT-V 235
           +P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A+ +
Sbjct: 185 IPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLI 244

Query: 236 MLVVSL 241
           +L VSL
Sbjct: 245 LLAVSL 250